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TOPIC: Error when Running simulation

Error when Running simulation 11 years 4 months ago #9708

  • yugi
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The problem comes from multiple installation of mpi.
It looks like you ahve openmi and mpich and you are not alway pointing on the same.

Hope it helps,
Yoann
There are 10 types of people in the world: those who understand binary, and those who don't.
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Error when Running simulation 11 years 4 months ago #9735

  • VictorOpenOcean
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Thank a lot for the help.
Almost everything works now, there are just a dozen of validation's case on telemac2d and one on telemac3d, which does't work without knowing why?

Thanks again Yoann,
Victor.
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Error when Running simulation 11 years 4 months ago #9743

  • yugi
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If you do not mind, could you tell me wish one and what error you get.
Thanks,
Yugi
There are 10 types of people in the world: those who understand binary, and those who don't.
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Error when Running simulation 11 years 4 months ago #9746

  • VictorOpenOcean
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for 011_bumpflu cas, for example:

$ python ./pytel/telemac2d.py ./validation_v6p2/telemac2d/tel2d_v6p2/011_bumpflu/t2d_bumpflu.cas

Loading Options and Configurations
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

... parsing configuration file: /home/victor/opentelemac/v6p2/config/systel.cfg


Running your CAS file for:
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

    +> configuration: ubugfopenmpi
    +> root:          /home/victor/opentelemac/v6p2
    +> version        v6p2


~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~



Running t2d_bumpflu.cas with telemac2d under /home/victor/opentelemac/v6p2/validation_v6p2/telemac2d/tel2d_v6p2/011_bumpflu
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

... reading module dictionary
... simulation en Francais avec  t2d_bumpflu.cas
    copying:  t2d_bumpflu.f /home/victor/opentelemac/v6p2/validation_v6p2/telemac2d/tel2d_v6p2/011_bumpflu/t2d_bumpflu.cas_2013-07-15-07h46min28s/t2dfort.f
 re-writing:  /home/victor/opentelemac/v6p2/validation_v6p2/telemac2d/tel2d_v6p2/011_bumpflu/t2d_bumpflu.cas_2013-07-15-07h46min28s/T2DCAS
    copying:  telemac2dv6p2.dico /home/victor/opentelemac/v6p2/validation_v6p2/telemac2d/tel2d_v6p2/011_bumpflu/t2d_bumpflu.cas_2013-07-15-07h46min28s/T2DDICO
    copying:  geo_bumpflu.slf /home/victor/opentelemac/v6p2/validation_v6p2/telemac2d/tel2d_v6p2/011_bumpflu/t2d_bumpflu.cas_2013-07-15-07h46min28s/T2DGEO
    copying:  geo_bumpflu.cli /home/victor/opentelemac/v6p2/validation_v6p2/telemac2d/tel2d_v6p2/011_bumpflu/t2d_bumpflu.cas_2013-07-15-07h46min28s/T2DCLI
    copying:  f2d_bumpflu.slf /home/victor/opentelemac/v6p2/validation_v6p2/telemac2d/tel2d_v6p2/011_bumpflu/t2d_bumpflu.cas_2013-07-15-07h46min28s/T2DREF
                                                                               

Running your simulation :
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


/usr/bin/mpiexec.openmpi -wdir /home/victor/opentelemac/v6p2/validation_v6p2/telemac2d/tel2d_v6p2/011_bumpflu/t2d_bumpflu.cas_2013-07-15-07h46min28s -n 1 /home/victor/opentelemac/v6p2/validation_v6p2/telemac2d/tel2d_v6p2/011_bumpflu/t2d_bumpflu.cas_2013-07-15-07h46min28s/out_t2d_bumpflu
_____________
runcode::main:
      /home/victor/opentelemac/v6p2/validation_v6p2/telemac2d/tel2d_v6p2/011_bumpflu:
   |runCAS: fail to run
   |      /usr/bin/mpiexec.openmpi -wdir /home/victor/opentelemac/v6p2/validation_v6p2/telemac2d/tel2d_v6p2/011_bumpflu/t2d_bumpflu.cas_2013-07-15-07h46min28s -n 1 /home/victor/opentelemac/v6p2/validation_v6p2/telemac2d/tel2d_v6p2/011_bumpflu/t2d_bumpflu.cas_2013-07-15-07h46min28s/out_t2d_bumpflu

$ /usr/bin/mpiexec.openmpi -wdir /home/victor/opentelemac/v6p2/validation_v6p2/telemac2d/tel2d_v6p2/011_bumpflu/t2d_bumpflu.cas_2013-07-15-07h46min28s -n 1 /home/victor/opentelemac/v6p2/validation_v6p2/telemac2d/tel2d_v6p2/011_bumpflu/t2d_bumpflu.cas_2013-07-15-07h46min28s/out_t2d_bumpflu

/home/victor/opentelemac/v6p2/validation_v6p2/telemac2d/tel2d_v6p2/011_bumpflu/t2d_bumpflu.cas_2013-07-15-07h46min28s/out_t2d_bumpflu: error while loading shared libraries: libmpich.so.3: cannot open shared object file: No such file or directory

I found the error, telemac is schearching mpich library "libmpich.so.3" I uninstalled, yet I compile with openmpi.
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Error when Running simulation 11 years 4 months ago #9748

  • yugi
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Maybe there is a -lmpich somewhere in your systel.cfg?
There are 10 types of people in the world: those who understand binary, and those who don't.
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Error when Running simulation 11 years 4 months ago #9752

  • VictorOpenOcean
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unfortunately, not once, look:

# _____                              _______________________________
# ____/ TELEMAC Project Definitions /______________________________/
#
[Configurations]
configs:    ubugfortrans ubugfopenmpi
# ubunsun32s ubunsun32p
# _____                         ____________________________________
# ____/ Ubuntu gfortran scalar /___________________________________/
[ubugfortrans]
#
root:       /home/victor/opentelemac/v6p2
version:    v6p2
language:   2
modules:    update system
options:
#
cmd_obj:    gfortran -c -O3 -ffixed-line-length-132 -fconvert=big-endian -frecord-marker=4 <mods> <incs> <f95name>
cmd_lib:    ar cru <libname> <objs>
cmd_exe:    gfortran -fconvert=big-endian -frecord-marker=4 -v -o <exename> <objs> -Wl,--start-group <libs> -Wl,--end-group
#
mods_all:   -I <config>
#
sfx_zip:    .gztar
sfx_lib:    .lib
sfx_obj:    .o
sfx_mod:    .mod
sfx_exe:
#
# also possible val_root:   <root>/../validation
val_root:   <modpath>/validation
val_rank:   all
# also possible val_rank:   <3 >7 6
#
# _____                          ___________________________________
# ____/ Ubuntu gfortran openMPI /__________________________________/
[ubugfopenmpi]
#
root:       /home/victor/opentelemac/v6p2
version:    v6p2
language:   2
modules:    update system
#
options:    parallel mpi
#
par_cmdexec:   <config>/partel < PARTEL.PAR >> <partel.log>
#
mpi_cmdexec:   /usr/bin/mpiexec.openmpi -wdir <wdir> -n <ncsize> <exename>
mpi_hosts:
#
cmd_obj:    gfortran -c -O3 -ffixed-line-length-132 -fconvert=big-endian -frecord-marker=4 <mods> <incs> <f95name>
cmd_lib:    ar cru <libname> <objs>
cmd_exe:    /usr/bin/mpif90.openmpi -fconvert=big-endian -frecord-marker=4 -lpthread -v -lm -o <exename> <objs>  -Wl,--start-group <libs> -Wl,--end-group
#
mods_all:   -I <config>
#
incs_parallel:	-I /usr/lib/openmpi/
libs_parallel:	/home/victor/opentelemac/v6p2/metis-5.1.0/build/Linux-x86_64/libmetis/libmetis.a
#libs_parallel:	/usr/lib/libmetis-edf.a
libs_all:	/usr/lib/openmpi/lib/libmpi.so
#
sfx_zip:    .gztar
sfx_lib:    .lib
sfx_obj:    .o
sfx_mod:    .mod
sfx_exe:
#
# also possible val_root:   <root>/../validation
val_root:   <modpath>/validation
val_rank:   all
# also possible val_rank:   <3 >7 6
#
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