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TOPIC: Problem launching a T3D case on a Linux cluster

Problem launching a T3D case on a Linux cluster 8 years 9 months ago #19808

  • chardacre
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Hi, I'm looking at this for PL

SELAFIN INPUT NAME <INPUT_NAME>:
INPUT: T2DGEO

BOUNDARY CONDITIONS FILE NAME :
INPUT: SERAFIN
FILE DOES NOT EXIST: SERAFIN



PLANTE: PROGRAM STOPPED AFTER AN ERROR
STOP 2

Backtrace for this error:
+ function plante_ (0x42413E)
+ in the main program
from file homere_partel.f
+ /lib64/libc.so.6(__libc_start_main+0xfd) [0x3a8ce1ed5d]
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Problem launching a T3D case on a Linux cluster 8 years 9 months ago #19810

  • chardacre
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Here is the error.
+> /gpfs/stfc/local/HCP012/jjd66/cxh71-jjd66/v7p1r0/builds/encore/bin/partel < PARTEL.PAR >> partel_T2DGEO.log
/bin/sh: line 1: 11862 Killed /gpfs/stfc/local/HCP012/jjd66/cxh71-jjd66/v7p1r0/builds/encore/bin/partel < PARTEL.PAR >> partel_T2DGEO.log
runPartition:
|runPARTEL: Could not split your file T2DGEO (runcode=137) with the error as follows:
|
|... The following command failed for the reason above (or below)
|/gpfs/stfc/local/HCP012/jjd66/cxh71-jjd66/v7p1r0/builds/encore/bin/partel < PARTEL.PAR >> partel_T2DGEO.log
|
| You may have forgotten to compile PARTEL with the appropriate compiler directive
| (add -DHAVE_MPI to your cmd_obj in your configuration file).
|
|Here is the log:
|


Here is the config line
cmd_obj: /gpfs/stfc/local/apps/gcc/gcc/4.9.1/bin/gfortran -c -O3 -fconvert=big-endian -frecord-marker=4 -DHAVE_MPI <mods> <incs> <f95name>
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Problem launching a T3D case on a Linux cluster 8 years 9 months ago #19811

  • chardacre
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If I run the test command again

/gpfs/stfc/local/HCP012/jjd66/cxh71-jjd66/v7p1r0/builds/encore/bin/partel < PARTEL.PAR

It appears to work until the following is output

"BEGIN PARTITIONING WITH METIS
Killed"

I'm using metis 5.1.0 as follows.

module load gcc/4.9.1 openmpi-gcc cmake/2.8.12 python/2.7.8
wget glaros.dtc.umn.edu/gkhome/fetch/sw/metis/metis-5.1.0.tar.gz
gunzip metis-5.1.0.tar.gz
tar -xvf metis-5.1.0.tar
rm -f metis-5.1.0.tar
cd ~/metis-5.1.0
vi include/metis.h # to be 64 bit
make config
make

Then adding this into the config file

libs_partel: /gpfs/stfc/local/HCP012/jjd66/cxh71-jjd66/metis-5.1.0/build/Linux-x86_64/libmetis/libmetis.a
Attachments:
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Problem launching a T3D case on a Linux cluster 8 years 9 months ago #19809

  • pilou1253
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Hi yugi,

Unfortunately i am going on holidays for a couple of weeks but chardacre took over the troubleshooting.

Thanks for all the help!

Best regards
PL
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Problem launching a T3D case on a Linux cluster 8 years 9 months ago #19812

  • yugi
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Hi,

Could you post the file partel.par.
It seems like you are missing the boundary condition file.

Hope it helps.
There are 10 types of people in the world: those who understand binary, and those who don't.
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Problem launching a T3D case on a Linux cluster 8 years 9 months ago #19813

  • chardacre
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Many thanks for your help

-bash-4.1$ cat PARTEL.PAR
T2DGEO
SERAFIN
T2DCLI
16
1


T2DGEO
SERAFIN
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Problem launching a T3D case on a Linux cluster 8 years 9 months ago #19815

  • yugi
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I missed the other messages.

The error seems to come from metis.
Could you try reinstalling with metis in 32bit to see if there is a difference?

Hope it helps
There are 10 types of people in the world: those who understand binary, and those who don't.
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Problem launching a T3D case on a Linux cluster 8 years 9 months ago #19818

  • chardacre
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Thanks again, 32 bit got me a bit further thank you.

The following errors are seen (attached for complete output)

PRERES: MAXAt line 132 of file /gpfs/stfc/local/HCP012/jjd66/cxh71-jjd66/v7p1r0/sources/utils/gretel/homere_gretel.f (unit = 5, file = 'stdin')
Fortran runtime error: End of file
Backtrace for this error:
+ in the main program
from file homere_gretel.f
+ /lib64/libc.so.6(__libc_start_main+0xfd) [0x379881ed1d]

Then

... merging separated result files

+> cas.cas
collecting: T2DRES
runRecollection:
|runGRETEL: Could not split your file T2DRES (runcode=2) with the error as follows:
|
|... The following command failed for the reason above (or below)
|/gpfs/stfc/local/HCP012/jjd66/cxh71-jjd66/v7p1r0/builds/encore/bin/gretel < gretel_T2DRES.par >> gretel_T2DRES.log
Attachments:
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Problem launching a T3D case on a Linux cluster 8 years 9 months ago #19819

  • chardacre
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Ah this file has been copied from windows, and contains ^M

cat -v randvillkor.cli
2 2 2 0.000 0.000 0.000 0.000 2 0.000 0.000 0.000 27 1 # ^M
2 2 2 0.000 0.000 0.000 0.000 2 0.000 0.000 0.000 72 2 # ^M
2 2 2 0.000 0.000 0.000 0.000 2 0.000 0.000 0.000 148 3 # ^M
2 2 2 0.000 0.000 0.000 0.000 2 0.000 0.000 0.000 241 4 # ^M
2 2 2 0.000 0.000 0.000 0.000 2 0.000 0.000 0.000 337 5 # ^M
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Problem launching a T3D case on a Linux cluster 8 years 9 months ago #19820

  • chardacre
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that didn't change the errors
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