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TOPIC: RedHatEnterprise

RedHatEnterprise 6 years 1 week ago #31942

  • iknponza
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Hi all!
I tried to install telemac in parallel in a cluster
LSB Version: :base-4.0-amd64:base-4.0-noarch:core-4.0-amd64:core-4.0-noarch:graphics-4.0-amd64:graphics-4.0-noarch:printing-4.0-amd64:printing-4.0-noarch
Distributor ID: RedHatEnterpriseComputeNode
Description: Red Hat Enterprise Linux ComputeNode release 6.5 (Santiago)
Release: 6.5
Codename: Santiago
The available modules are:
/usr/share/Modules/modulefiles
dot module-git module-info modules null use.own

/opt/SC/modulefiles/aplicaciones
adf/2013.01(default) orca/4.0.1
admixture/1.3.0 PARI
amber/14 partitionfinder/2.1.1
amber/16 phylonet/2.4
beast/1.8.4 qchem/4.4-parallel-MPICH
beast2/2.4.6 qchem/4.4-serial-multicore
bpp/3.3 qchem/5.0-parallel-MPICH
cp2k/4.1 qchem/5.0-serial-multicore
csds/2018 quantum/5.0.2-d-mpi
desmond/2013.1 quantum/5.2.1-d-mpi
desmond/2015.1 quantum/5.4.0-d-gpu
desmond/2015.4 quantum/5.4.0-d-mpi
eman2/12.1(default) quantum/6.1
epw/3.0.0-d-mpi(default) quantum/6.2.1
epw/4.0.0-d-mpi RASPA/2.0-intel-15.0.1
exabayes/1.5(default) RAxML/8.2.10
gamess/R1_dic14-d-mpi rosetta/3.9
gaussian/2016.03 samtools/1.0-gcc-4.4.6-s-serial
gaussian/G09-C.01 siesta/3.2-d-mpi(default)
gaussian/G09-D.01 siesta/4.0.1
gaussian/G09-E.01(default) stacks/1.45
gromacs/4.6.7 stacks/2.2
gromacs/5.0.4 stacks2/2.0-b8c
gromacs51/5.1.4 thermo_pw/0.5.0
julia/0.5.1 transiesta/3.2
lammps/30Jul16 treePL/1
namd/2.10 velvet/1.2.10
ncbi-blast/2.2.31-intel-15.0.1 VinaLC/1.1.2
nco/4.5.0-intel-15.0.1 west/2.0.0
nwchem/6.5.26243(default) wien2k/14.2(default)
octopus/6.0 yaehmop/3.0.3-s-serial(default)
orca/3.0.2

/opt/SC/modulefiles/bibliotecas
bdw-gc/7.6.0
beagle/2.1.2
blitz++/0.10-intel-15.0.1
boost/1.6.0
cfitsio/3.370-intel-15.0.1
eigen/3.3.4
eispack/1.0.0-intel-15.0.1-q-serial(default)
fftw3/3.3.4-intel-15.0.1
glibc/2.14(default)
hdf5/1.8.15-intel-15.0.1
libatomic_ops/7.4.4
libint/1.1.5
libmatheval/1.1.11
libxc/2.2.3
magma/1.6.2-intel-15.0.1
mkl/11.2_update1(default)
mkl/2017_update3
mpi/intel-2017_update3
mpi/intel-5.0.2p-044(default)
mpi/opemmi-3.0.0-intel
mpi/openmpi-1.8.3
mpi/openmpi-2.1.5
ncv/2.1.7
netcdf/4.3.3.1-intel-15.0.1
netcdf-fortran/4.4.2-intel-15.0.1
parallel-netcdf/1.5.0-intel-2015.1.133-d-paralelo
szip/2.1-gcc-4.4.7
xdrfile/1.1.4

/opt/SC/modulefiles/compiladores
gcc/5.2.1 intel/2015.1.133(default) intel/2017_update4

/opt/SC/modulefiles/herramientas
advisor/2015.1.10.380555 miniconda/4.3.18(default)
advisor/2017_update3 python/2.7.13
cuda/6.0 python/3.4.2
cuda/6.5(default) python27/2.7.8
cuda/7.5 python34/3.4.2
expat2.1/2.1.0 tbb/2017_update3
inspector/2015.1.2.379161 trace-analyzer/2017_update3
inspector/2017_update3 trace-analyzer/9.0.2.045
intel/tools/13.0.1 vtune-amplifier/2015.1.1.380310
ipp/2017_update3 vtune-amplifier/2017_update3
libdb/5.3.28


in the bashrc, I have:

# .bashrc

# Source global definitions
if [ -f /etc/bashrc ]; then
. /etc/bashrc
fi

#

module load gcc/5.2.1
module load mpi/openmpi-2.1.5
module load python/2.7.13

alias python="/opt/rh/python27/root/usr/bin/python"
alias gfortran="/opt/rh/devtoolset-4/root/usr/bin/gfortran"
export PATH=/home/mbv_g/cacc_a/telemac/v7p2r2/scripts/python27/:$PATH
export SYSTELCFG=/home/mbv_g/cacc_a/telemac/v7p2r2/configs/systel.cfg
when carrying out the process:
source ~/.bashrc
ERROR: actualmente tienes cargada otra suite de compilacion.
ERROR: actualmente tienes cargada otra suite de python.
Currently Loaded Modulefiles:
1) gcc/5.2.1 2) mpi/openmpi-2.1.5 3) python/2.7.13

Attached file pysource.sh and systel.cfg
The output is in the out.txt file
I hope you can help me, regards!
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