TELEMAC-MASCARET Forum: Compiling on Ubuntu 18.10 (5/6)

Compiling on Ubuntu 18.10 5 years 8 months ago #33186

yugi OFFLINE openTELEMAC Guru Posts: 851 Thank you received: 244	This is because you are missing a - before DSHARED the command should be: cmake -D CMAKE_INSTALL_PREFIX=~/Telemac/v8p0r1/optionals/metis-5.1.0/build -DSHARED=TRUE
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Compiling on Ubuntu 18.10 5 years 8 months ago #33187

Mustermann
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Expert Boarder
Posts: 268
Thank you received: 4

Hello.

That does not work either.
But I added a "." behind the PATH like so

cmake -D CMAKE_INSTALL_PREFIX=~/Telemac/v8p0r1/optionals/metis-5.1.0/build . -DSHARED=TRUE

which results in start of building but then coming to a similar error again. Attached is the log file and following the command line output.

-- The C compiler identification is GNU 8.2.0
-- The CXX compiler identification is GNU 8.2.0
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Looking for execinfo.h
-- Looking for execinfo.h - found
-- Looking for getline
-- Looking for getline - found
CMake Error at /home/clemens/Telemac/v8p0r1/optionals/metis-5.1.0/CMakeFiles/CMakeTmp/CMakeLists.txt:12 (add_executable):
  Cannot find source file:

    GKlib/conf/check_thread_storage.c

  Tried extensions .c .C .c++ .cc .cpp .cxx .cu .m .M .mm .h .hh .h++ .hm
  .hpp .hxx .in .txx


CMake Error at /home/clemens/Telemac/v8p0r1/optionals/metis-5.1.0/CMakeFiles/CMakeTmp/CMakeLists.txt:12 (add_executable):
  No SOURCES given to target: cmTC_f5689


CMake Error at GKlib/GKlibSystem.cmake:110 (try_compile):
  Failed to generate test project build system.
Call Stack (most recent call first):
  CMakeLists.txt:20 (include)


-- Configuring incomplete, errors occurred!
See also "/home/clemens/Telemac/v8p0r1/optionals/metis-5.1.0/CMakeFiles/CMakeOutput.log".

Attachments:

CMakeOutput.txt (51KB)

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Compiling on Ubuntu 18.10 5 years 8 months ago #33189

yugi OFFLINE openTELEMAC Guru Posts: 851 Thank you received: 244	This is a bug from metis. In the metsi folder change the line containing set(GKLIB_PATH...) by set(GKLIB_PATH "${CMAKE_CURRENT_SOURCE_DIR}/GKlib") Hopefully that should do the trick
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Compiling on Ubuntu 18.10 5 years 8 months ago #33190

Mustermann OFFLINE Expert Boarder Posts: 268 Thank you received: 4	That did the trick. Thanks. Since I just got a libmetis.so file and no libmetis.a I changed that in my .cfg file, but now I am facing an issue with Nestor. I can remember I had that once as well but not sure how I came over it. Attached is my log file. Attachments: compile_20...3-14.txt (404KB)
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Compiling on Ubuntu 18.10 5 years 8 months ago #33193

yugi OFFLINE openTELEMAC Guru Posts: 851 Thank you received: 244	Just remove the -DSHARED:true to have a libmetis.a and rerun the installation.
	There are 10 types of people in the world: those who understand binary, and those who don't. The administrator has disabled public write access.

Compiling on Ubuntu 18.10 5 years 8 months ago #33196

Mustermann OFFLINE Expert Boarder Posts: 268 Thank you received: 4	Did so but still no libmetis.a file.
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Compiling on Ubuntu 18.10 5 years 8 months ago #33197

yugi OFFLINE openTELEMAC Guru Posts: 851 Thank you received: 244	Maybe remove CMakeCache.txt and redo it all.
	There are 10 types of people in the world: those who understand binary, and those who don't. The administrator has disabled public write access. The following user(s) said Thank You: Mustermann

Compiling on Ubuntu 18.10 5 years 8 months ago #33198

Mustermann OFFLINE Expert Boarder Posts: 268 Thank you received: 4	That worked well. Now I still have the issue with Nestor when compiling Telemac. I just attach my compile.log here. Attachments: compile_20...14-2.txt (404KB)
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Compiling on Ubuntu 18.10 5 years 8 months ago #33200

yugi OFFLINE openTELEMAC Guru Posts: 851 Thank you received: 244	You are missing the option -cpp in your configuration in cmd_obj. Add it and rerun compileTELEMAC.py --clean That should do the trick.
	There are 10 types of people in the world: those who understand binary, and those who don't. The administrator has disabled public write access. The following user(s) said Thank You: Mustermann, Htun Pyae Sone

Compiling on Ubuntu 18.10 5 years 8 months ago #33202

Mustermann OFFLINE Expert Boarder Posts: 268 Thank you received: 4	Thanks I missed that. Just compiled and running a example case (litoral) to test the compilation. I got the the result files in scalar and parallel, but still get an error, which is related to python. from scipy.spatial import cKDTree ImportError: No module named scipy.spatial Would it help to reinstall scipy?
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