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TOPIC: Problem with running a validation test case: Telemac v6p2 for Linux

Problem with running a validation test case: Telemac v6p2 for Linux 12 years 1 month ago #5799

  • jpbelliard
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Dear all,

I am currently facing a problem with running one of the test cases in the validation folder I downloaded in the opentelemac website, and I would like to get your expertise on how to solve it.

Basically, I installed the Telemac v6p2 version for Linux for use in scalar mode by downloading the corresponding compiled codes from the website. Regarding my OS, I have the Ubuntu 12.04 version and I use Gfortran for compiling the source codes and Perl the executing Telemac, both being already pre-installed in Ubuntu. I believe to have configured the Telemac system accordingly as I followed the procedure written in the manual “installation_telemac_unix-linux-windows_v6p0-060710_gb.pdf”:

1. I setup the two environmental variables in the terminal
2. I modified the systel.ini file accordingly (i.e., project path and the host type, while the perl paths were already correct)
3. I converted the systel.ini file from Win to Linux with the fromdos command
4. Then I run cfgmak command in the config folder which created the cfgmak.mak file
5. And I compiled everything at once by means of the makeall90 command without obtaining errors

However, when I tried to run a validation case (e.g. the weirs.cas in my case), I get the following error:



jp@jp-B43E:~/Modelling/validation_v6p1/telemac2d/tel2d_v6p1/037_weirs$ telemac2d t2d_weirs.cas

=========================================================
Telemac System 5.6 to 6.2 - Perl scripts version 6.2
=========================================================
starting...

HOSTTYPE : gfortran
PROJECT : /home/jp/Modelling/compiled_codes
BASE DIRECTORY : /home/jp/Modelling/validation_v6p1/telemac2d/tel2d_v6p1/037_weirs
LAUNCH DIRECTORY : /home/jp/Modelling/validation_v6p1/telemac2d/tel2d_v6p1/037_weirs
WORK DIRECTORY : /home/jp/Modelling/validation_v6p1/telemac2d/tel2d_v6p1/037_weirs/t2d_weirs.cas13007_tmp
PARAMETER FILE : t2d_weirs.cas


*** Using default configuration file :
/home/jp/Modelling/compiled_codes/config/systel.ini ***


________________________________________________________
ERROR : unable to find the dictionary :
'/home/jp/Modelling/compiled_codes/telemac2d/tel2d_v6p1/lib/telemac2dv6p1.dico'
________________________________________________________
Returning exit status 1

=========================================================
Telemac System 5.6 to 6.2 - Perl scripts version 6.2
=========================================================
...stopping.



I went to the corresponding folder where the .dico file was not found, and I actually found a .dico file but with a different name : telemac2dv6p2.dico instead of telemac2dv6p1.dico

I believe that since I installed the v6p2 version of Telemac whereas the v6p1 validation test case I was trying to run is of a different version, this might be the source of this problem.

Is there therefore any way to overcome this problem? I saw in the website that there is no validation .zip file v6p2 and I really would like to test my Telemac to see whether everything works properly.

Kind regards,
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Problem with running a validation test case: Telemac v6p2 for Linux 12 years 1 month ago #5802

  • c.coulet
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Hi
Is your systel.ini file well updated for version number.
Check in it if varaibles VERSXXX in the beginning are v6p1 or v6p2.

You could also check in the steering file of the validation test case that there is no keyword with VERSION = V6P1...

The valiadation test case for v6p2 are available with the SVN.

Hope this helps
Christophe
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Problem with running a validation test case: Telemac v6p2 for Linux 12 years 1 month ago #5809

  • jpbelliard
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Hi Christophe,

Thanks. You were right, I checked the versions in systel.ini file and indeed they were not updated. So I changed from v6p1 to v6p2 and ran again the weirs sterring file without getting this error anymore. However, looks like I get execution errors as you can see in the following:


jp@jp-B43E:~/Modelling/validation_v6p1/telemac2d/tel2d_v6p1/037_weirs$ telemac2d t2d_weirs.cas

=========================================================
Telemac System 5.6 to 6.2 - Perl scripts version 6.2
=========================================================
starting...

HOSTTYPE : gfortran
PROJECT : /home/jp/Modelling/compiled_codes
BASE DIRECTORY : /home/jp/Modelling/validation_v6p1/telemac2d/tel2d_v6p1/037_weirs
LAUNCH DIRECTORY : /home/jp/Modelling/validation_v6p1/telemac2d/tel2d_v6p1/037_weirs
WORK DIRECTORY : /home/jp/Modelling/validation_v6p1/telemac2d/tel2d_v6p1/037_weirs/t2d_weirs.cas22572_tmp
PARAMETER FILE : t2d_weirs.cas


*** Using default configuration file :
/home/jp/Modelling/compiled_codes/config/systel.ini ***



*** TELEMAC2D ON STATION ***


*** Interactive mode ***


*** RELEASE v6p2 ***

________________________________________________________
Steering file : t2d_weirs.cas
________________________________________________________

________________________________________________________
Starting execution: telemac2d.bat
________________________________________________________
______________________________________________________________________________
*** DEFAULT EXECUTABLE ***

/home/jp/Modelling/compiled_codes/telemac2d/tel2d_v6p2/gfortran/telemac2dv6p2.exe
DEFAULT EXECUTABLE NOT FOUND
______________________________________________________________________________
*** ALLOCATION OF USER FILES ***

- STEERING FILE : t2d_weirs.cas
- DICTIONARY : telemac2dv6p2.dico
- GEOMETRY FILE : geo_weirs.slf
- BOUNDARY CONDITIONS FILE : geo_weirs.cli
- FORMATTED DATA FILE 1 : fo1_weirs.txt
- REFERENCE FILE : f2d_weirs.slf
______________________________________________________________________________
*** RUNNING ***

time: cannot run ./out22572_gfortran.exe: No such file or directory
Command exited with non-zero status 127
0.00user 0.00system 0:00.00elapsed ?%CPU (0avgtext+0avgdata 1440maxresident)k
0inputs+0outputs (0major+77minor)pagefaults 0swaps
## Erreur : Fin anormale : time ./out22572_gfortran.exe :32512
## Error : System command failed for /home/jp/Modelling/validation_v6p1/telemac2d/tel2d_v6p1/037_weirs/t2d_weirs.cas22572_tmp/telemac2d.bat :6400
________________________________________________________
Execution finished: telemac2d.bat
________________________________________________________
No compilation/linking/file errors detected.
Execution errors detected.
Please see messages in stdout above or study stderr output.

Working directory: /home/jp/Modelling/validation_v6p1/telemac2d/tel2d_v6p1/037_weirs/t2d_weirs.cas22572_tmp
can be manually deleted with: /home/jp/Modelling/validation_v6p1/telemac2d/tel2d_v6p1/037_weirs/delete_t2d_weirs.cas22572

Returning exit status 1

=========================================================
Telemac System 5.6 to 6.2 - Perl scripts version 6.2
=========================================================
...stopping.

Any idea what could be the source of the problem ?

Kind regards,

Jean-Philippe
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Problem with running a validation test case: Telemac v6p2 for Linux 12 years 1 month ago #5810

  • c.coulet
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Hi

There was some changes in the version 6.2 and one particularly on the file which describe the weir.
In order to well define the datas and to keep available the formatted files for users, the weir data are know located in a dedicated file with new keyword WEIR DATA FILE.
Have a llok into the dictionnary or downlaod the validation test cases of the version 6.2

Regards
Christophe
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Problem with running a validation test case: Telemac v6p2 for Linux 12 years 1 month ago #5812

  • jmhervouet
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Hello,

The modifications of version 6.2 compared with version 6.1 can be found on this site in the bottom of home page under the topic "feature log" (this is not very clear for many people and should be more advertised).

With best regards,

Jean-Michel Hervouet
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Problem with running a validation test case: Telemac v6p2 for Linux 12 years 1 month ago #5815

  • jpbelliard
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Hi again,

I am struggling at installing the new validation v6p2 files. I managed to access to the SVN repository directly through the command line terminal instead of using the integrated tool called KDESVN since I was not able to understand how to install it.

However, once entering the SVN repository, I was only able to download the source codes (i.e. v6p2r1). I couldn't update the validation files. How do you proceed ? By the way, is the v6p2r1 telemac source codes obtained by svn different from the the v6p2 telemac compiled codes ?

Thanks for your reply
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Problem with running a validation test case: Telemac v6p2 for Linux 12 years 1 month ago #5816

  • pham
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Hi Jean-Philippe,

As told in post www.opentelemac.org/index.php?option=com...77&limitstart=8#5639
validation test cases can be downloaded via svn in svn.opentelemac.org/svn/opentelemac/validation/

I suppose that the tag v6p2r1 is coherent with v6p2 pre-compiled codes, but I did not do the job. I let other colleagues answer. Anyway, Telemac users are now advised to use svn and compile the codes by themselves with python scripts.

Regards,

Chi-Tuan
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Problem with running a validation test case: Telemac v6p2 for Linux 12 years 1 month ago #5817

  • sebourban
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I can confirm indeed that v6p2r1 as an svn-tag is the same code as was used to compile the binaries of version v6p2. The binaries will always be provided for the latest release of the TELEMAC system ... until we successfully convince everyone to use the SVN site or provide another self install program.

Hope this helps.

Sébastien.
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Problem with running a validation test case: Telemac v6p2 for Linux 12 years 1 month ago #5850

  • ails
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Hello,

I think that you may have missed an error when you compiled TELEMAC V6P2. The default excutable has not been created.

*** DEFAULT EXECUTABLE ***
/home/jp/Modelling/compiled_codes/telemac2d/tel2d_v6p2/gfortran/telemac2dv6p2.exe
DEFAULT EXECUTABLE NOT FOUND


And as you are not using any user fortran file, no executable is created.

Please check if either /home/jp/Modelling/compiled_codes/telemac2d/tel2d_v6p2/gfortran/telemac2dv6p2.exe or /home/jp/Modelling/compiled_codes/telemac2d/tel2d_v6p2/gfortran/telemac2dv6p2.a exists.

If not, you must run "maktel install" and check the errors.
if the ".a" archive does exist, you can try to re-create the executable by using en empty user fortran file (keyword FORTRAN FILE).

Regards,

Fabien Decung
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Problem with running a validation test case: Telemac v6p2 for Linux 12 years 1 month ago #5851

  • jpbelliard
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Hi again,

You are right. It looks like a compilation problem because even though I used the new version of the validation files (v6p2), I get exactly the same error messages when I tried to run any .cas file.

In fact, I tried to compile everything at once by typing makeall90 and also module by module (step by step) using the combination maketel menage and maketel install, and both ways seem not to work fully because when I go afterwards into the gfortran directory: /home/jp/Modelling/compiled_codes/telemac2d/tel2d_v6p2/gfortran, there are only .mod files and not any archive (telemac2dv6p2.exe) or executable files (telemac2dv6p2.a) and this occurs for every module (sisyphe, telemac2d, telemac3d ...).

I display below the error message when I compile the source codes in the telemac2d module. You can see the error messages at the end of the log message:



jp@jp-B43E:~/Modelling/compiled_codes/telemac2d/tel2d_v6p2/sources$ maktel menage
Efface les objets, librairies, executables et core-file.
jp@jp-B43E:~/Modelling/compiled_codes/telemac2d/tel2d_v6p2/sources$ maktel install
=> Compilation de friction_def.f :
Transfert du module friction_def.mod
=> Compilation de declarations_telemac2d.f :
Transfert du module declarations_telemac2d.mod
=> Compilation de interface_telemac2d.f :
Transfert du module interface_telemac2d.mod
=> Compilation de m_coupling_estel3d.f :
Transfert du module m_coupling_estel3d.mod
=> Compilation de tpxo.f :
Transfert du module tpxo.mod
=> Compilation de okada.f :
Transfert du module okada.mod
=> Compilation de homere_telemac2d.f :
=> Compilation de lecdon_telemac2d.f :
=> Compilation de akepin.f :
=> Compilation de assignstr.f :
=> Compilation de astro.f :
=> Compilation de bilan.f :
=> Compilation de bilant1.f :
=> Compilation de bord.f :
=> Compilation de bord_tidal_bc.f :
=> Compilation de bord_tide.f :
=> Compilation de bord_tide_legos.f :
=> Compilation de breach.f :
=> Compilation de buse.f :
=> Compilation de caldt.f :
=> Compilation de cdl.f :
=> Compilation de cdlproj.f :
=> Compilation de cdlzz.f :
=> Compilation de cdl_hllc.f :
=> Compilation de cdl_tch.f :
=> Compilation de cdl_waf.f :
=> Compilation de celerite.f :
=> Compilation de chpcon.f :
=> Compilation de clhuvt.f :
=> Compilation de clsing.f :
=> Compilation de cltrac.f :
=> Compilation de coefmat.f :
=> Compilation de coefro.f :
=> Compilation de complim.f :
=> Compilation de condin.f :
=> Compilation de condin_adj.f :
=> Compilation de conv_mercator_to_degdec.f :
=> Compilation de conv_lambert_to_degdec.f :
=> Compilation de corfon.f :
=> Compilation de corpor.f :
=> Compilation de cornor.f :
=> Compilation de correction_depth_2d.f :
=> Compilation de corstr.f :
=> Compilation de corvis.f :
=> Compilation de cosake.f :
=> Compilation de cost_function.f :
=> Compilation de cubeequation.f :
=> Compilation de debimp.f :
=> Compilation de debsce.f :
=> Compilation de def_zones.f :
=> Compilation de difsou.f :
=> Compilation de disper.f :
=> Compilation de dragcoeff.f :
=> Compilation de dragfo.f :
=> Compilation de entete.f :
=> Compilation de exlim.f :
=> Compilation de fdnrst.f :
=> Compilation de filter_h.f :
=> Compilation de flot.f :
=> Compilation de flucin.f :
=> Compilation de flucint.f :
=> Compilation de fluhyd.f :
=> Compilation de fluroe.f :
=> Compilation de flusec_telemac2d.f :
=> Compilation de flusew.f :
=> Compilation de flusrc.f :
=> Compilation de flutrac.f :
=> Compilation de fluxe.f :
=> Compilation de fluxzz.f :
=> Compilation de flux_hllc.f :
=> Compilation de flux_waf.f :
=> Compilation de flux_tch.f :
=> Compilation de flu_tchamen.f :
=> Compilation de flu_zokagoa.f :
=> Compilation de fluxpr_telemac2d.f :
=> Compilation de fricti.f :
=> Compilation de friction.f :
=> Compilation de friction_bubble.f :
=> Compilation de friction_lindner.f :
=> Compilation de friction_calc.f :
=> Compilation de friction_quad.f :
=> Compilation de friction_unif.f :
=> Compilation de friction_zones.f :
=> Compilation de friction_user.f :
=> Compilation de friction_read.f :
=> Compilation de friction_scan.f :
=> Compilation de friction_init.f :
=> Compilation de friction_choice.f :
=> Compilation de gestio.f :
=> Compilation de gradnod.f :
=> Compilation de gradnodt.f :
=> Compilation de gradz.f :
=> Compilation de grad_zconv.f :
=> Compilation de homere_adj_t2d.f :
=> Compilation de hpropa.f :
=> Compilation de hyd_hllc.f :
=> Compilation de hyd_waf.f :
=> Compilation de interpol.f :
=> Compilation de href.f :
=> Compilation de incide.f :
=> Compilation de initstr.f :
=> Compilation de intemp.f :
=> Compilation de isitok.f :
=> Compilation de kepscl.f :
=> Compilation de kepsil.f :
=> Compilation de kepsin.f :
=> Compilation de lagran.f :
=> Compilation de lecbus.f :
=> Compilation de lecbreach.f :
=> Compilation de lecsip.f :
=> Compilation de lecsng.f :
=> Compilation de limiter.f :
=> Compilation de loiden.f :
=> Compilation de loinoy.f :
=> Compilation de majtrac.f :
=> Compilation de majzz.f :
=> Compilation de marast.f :
=> Compilation de masbas2d.f :
=> Compilation de maskob.f :
=> Compilation de matbou.f :
=> Compilation de mesures.f :
=> Compilation de meteo.f :
=> Compilation de metgra.f :
=> Compilation de newstr.f :
=> Compilation de nodalf_pugh.f :
=> Compilation de nodalf_schureman.f :
=> Compilation de nodalupv_pugh.f :
=> Compilation de nodalupv_schureman.f :
=> Compilation de nomvar_telemac2d.f :
=> Compilation de output_telemac2d.f :
=> Compilation de point_telemac2d.f :
=> Compilation de point_adj_t2d.f :
=> Compilation de oil_spill_2d.f :
=> Compilation de poros.f :
=> Compilation de poro11.f :
=> Compilation de prebor.f :
=> Compilation de preres_telemac2d.f :
=> Compilation de propag.f :
=> Compilation de propag_adj.f :
=> Compilation de propin_telemac2d.f :
=> Compilation de prosou.f :
=> Compilation de q.f :
=> Compilation de read_fic_curves.f :
=> Compilation de read_fic_sources.f :
=> Compilation de read_sections_telemac2d.f :
=> Compilation de receding.f :
=> Compilation de reinit.f :
=> Compilation de rescue.f :
=> Compilation de resolu.f :
=> Compilation de read_fic_frliq.f :
=> Compilation de rotne0.f :
=> Compilation de seg_neighbors.f :
=> Compilation de siphon.f :
=> Compilation de sl.f :
=> Compilation de smagor.f :
=> Compilation de smoothing_flux.f :
=> Compilation de smtrac.f :
=> Compilation de sorflo.f :
=> Compilation de source_telemac2d.f :
=> Compilation de spectre.f :
=> Compilation de sta_dis_cur.f :
=> Compilation de steady.f :
=> Compilation de tel4del.f :
=> Compilation de telemac2d.f :
=> Compilation de testeur.f :
=> Compilation de thomps.f :
=> Compilation de tidal_model_t2d.f :
=> Compilation de tr.f :
=> Compilation de trsce.f :
=> Compilation de utimp_telemac2d.f :
=> Compilation de valro.f :
=> Compilation de vistur.f :
=> Compilation de vit.f :
=> Compilation de volfin.f :
=> Compilation de vusce.f :
=> Compilation de vvsce.f :
=> Compilation de wall_friction.f :
=> Compilation de wetdry.f :
=> Compilation de wrihyd.f :
=> Compilation de zeropsi.f :
=> Compilation de zerophi.f :
Archive telemac2dv6p2.a ...
Termine.
Link executable par defaut ...
Driving: gfortran -fconvert=big-endian -frecord-marker=4 -v -l gfortran -lm -o telemac2dv6p2.exe friction_def.o declarations_telemac2d.o interface_telemac2d.o m_coupling_estel3d.o tpxo.o okada.o homere_telemac2d.o lecdon_telemac2d.o akepin.o assignstr.o astro.o bilan.o bilant1.o bord.o bord_tidal_bc.o bord_tide.o bord_tide_legos.o breach.o buse.o caldt.o cdl.o cdlproj.o cdlzz.o cdl_hllc.o cdl_tch.o cdl_waf.o celerite.o chpcon.o clhuvt.o clsing.o cltrac.o coefmat.o coefro.o complim.o condin.o condin_adj.o conv_mercator_to_degdec.o conv_lambert_to_degdec.o corfon.o corpor.o cornor.o correction_depth_2d.o corstr.o corvis.o cosake.o cost_function.o cubeequation.o debimp.o debsce.o def_zones.o difsou.o disper.o dragcoeff.o dragfo.o entete.o exlim.o fdnrst.o filter_h.o flot.o flucin.o flucint.o fluhyd.o fluroe.o flusec_telemac2d.o flusew.o flusrc.o flutrac.o fluxe.o fluxzz.o flux_hllc.o flux_waf.o flux_tch.o flu_tchamen.o flu_zokagoa.o fluxpr_telemac2d.o fricti.o friction.o friction_bubble.o friction_lindner.o friction_calc.o friction_quad.o friction_unif.o friction_zones.o friction_user.o friction_read.o friction_scan.o friction_init.o friction_choice.o gestio.o gradnod.o gradnodt.o gradz.o grad_zconv.o homere_adj_t2d.o hpropa.o hyd_hllc.o hyd_waf.o interpol.o href.o incide.o initstr.o intemp.o isitok.o kepscl.o kepsil.o kepsin.o lagran.o lecbus.o lecbreach.o lecsip.o lecsng.o limiter.o loiden.o loinoy.o majtrac.o majzz.o marast.o masbas2d.o maskob.o matbou.o mesures.o meteo.o metgra.o newstr.o nodalf_pugh.o nodalf_schureman.o nodalupv_pugh.o nodalupv_schureman.o nomvar_telemac2d.o output_telemac2d.o point_telemac2d.o point_adj_t2d.o oil_spill_2d.o poros.o poro11.o prebor.o preres_telemac2d.o propag.o propag_adj.o propin_telemac2d.o prosou.o q.o read_fic_curves.o read_fic_sources.o read_sections_telemac2d.o receding.o reinit.o rescue.o resolu.o read_fic_frliq.o rotne0.o seg_neighbors.o siphon.o sl.o smagor.o smoothing_flux.o smtrac.o sorflo.o source_telemac2d.o spectre.o sta_dis_cur.o steady.o tel4del.o telemac2d.o testeur.o thomps.o tidal_model_t2d.o tr.o trsce.o utimp_telemac2d.o valro.o vistur.o vit.o volfin.o vusce.o vvsce.o wall_friction.o wetdry.o wrihyd.o zeropsi.o zerophi.o /home/jp/Modelling/svn/v6p2r1/sisyphe/sisyphe_v6p2/gfortran/sisyphev6p2.a /home/jp/Modelling/svn/v6p2r1/tomawac/toma_v6p2/gfortran/tomawacv6p2.a /home/jp/Modelling/svn/v6p2r1/bief/bief_v6p2/gfortran/biefv6p2.a /home/jp/Modelling/svn/v6p2r1/damocles/damo_v6p2/gfortran/damov6p2.a /home/jp/Modelling/svn/v6p2r1/special/special_v6p2/gfortran/specialv6p2.a /home/jp/Modelling/svn/v6p2r1/paravoid/paravoid_v6p2/gfortran/paravoidv6p2.a /home/jp/Modelling/svn/v6p2r1/mumpsvoid/mumpsvoid_v6p2/gfortran/mumpsvoidv6p2.lib -l gfortran -l m -shared-libgcc
gfortran: error: /home/jp/Modelling/svn/v6p2r1/sisyphe/sisyphe_v6p2/gfortran/sisyphev6p2.a: No such file or directory
gfortran: error: /home/jp/Modelling/svn/v6p2r1/tomawac/toma_v6p2/gfortran/tomawacv6p2.a: No such file or directory
gfortran: error: /home/jp/Modelling/svn/v6p2r1/mumpsvoid/mumpsvoid_v6p2/gfortran/mumpsvoidv6p2.lib: No such file or directory
Using built-in specs.
COLLECT_GCC=gfortran
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.6/lto-wrapper
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu/Linaro 4.6.3-1ubuntu5' --with-bugurl=file:///usr/share/doc/gcc-4.6/README.Bugs --enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.6 --enable-shared --enable-linker-build-id --with-system-zlib --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.6 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-gnu-unique-object --enable-plugin --enable-objc-gc --disable-werror --with-arch-32=i686 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 4.6.3 (Ubuntu/Linaro 4.6.3-1ubuntu5)
make: *** [telemac2dv6p2.exe] Error 1



And this occurs for the three modules: telemac2d, telemac3d and sisyphe.
The problem is that I cannot modify anything since I do not have any archive file. Any suggestion ? My question is how the fortran compiler is called during the compilation? Because I only called it in the systel.ini file where I typed "gfortran" as hosttype.

Thank you for your kind reply

Regards,
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