... as for your wave profile, the mesh could have an impact, but I would first try to make your numerical coefficients the most appropriate for this case. In particular:
TYPE OF ADVECTION : 1;5
TREATMENT OF THE LINEAR SYSTEM : 2
SOLVER : 1
IMPLICITATION FOR DEPTH = 0.55 # or, if stable 0.51
IMPLICITATION FOR VELOCITY = 0.55 # or,if stable 0.51
The later two should be accompanied by the following change to the LECDON_TELEMAC2D.f (make a copy into your PRINCI file, and modify as follows ...)
...
! IMPLICIT VELOCITY AND DEPTH (NOT COMPULSORY BUT MORE STABLE)
! FOLLOWING LINE COMMENTED OUT AFTER USER CLUB 2010 (REMARK BY ALAN COOPER)
! TETAU = 1.D0
TETAC = 1.D0
...
The last line with TETAC should also be commented out.
Note that we have made that change in the upcoming v6p2. It used to be there in previous versions to make some of our numerical schemes more stable / faster.
Hope this helps.
Sébastien.