Dear Sumit
Can you send us your liquid boundaries file to have a better description of the evolution in time of your flow.
Moreover, we (at least I) need to know why the everaged water depth drops abruptly during the time interval you've mentioned. So, is it possible to have the evolution of the velocity in time.
Actually, if there is no confidentiality constraints, can you attach your cases in order to get global idea about your friction destribution, your mesh quality, your bathymetry description etc.
Kind regards
Riadh