TELEMAC-MASCARET Forum: Runnin Telemac -3d with python script on cluster (3/3)

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TOPIC: Runnin Telemac -3d with python script on cluster

Runnin Telemac -3d with python script on cluster 10 years 1 month ago #15886

sebourban OFFLINE Administrator Principal Scientist Posts: 814 Thank you received: 219	Hello, make sure you have -DHAVE_MPI in the hydra (and hydru) configuration(s). Hope this helps, Sébastien. PS: note that if yo udo a run with hydro first, you need to recreate the local exe when you switch to hydra (or hydru or hydry).
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Runnin Telemac -3d with python script on cluster 9 years 6 months ago #18256

Gaeta	Hello, could you kindly attaching your example of systel.cfg file with PBS commands? I'm trying to compile and run telemac on a Linux Infiniband Cluster, CentOS 7.0. Any helps on how configuring the systel file will be really appreciated. Regards, Gabriella
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Runnin Telemac -3d with python script on cluster 9 years 5 months ago #18691

Flo64

Hi,

I want to make a run with telemac2d v7p0 with python on cluster.
THe compilation seems ok and i can make this run in sequential mode.

When i try to run in parallal mode, i have the same error as Konsonaut.
BEGIN PARTITIONING WITH METIS
ERROR: TRY TO RUN PARTEL WITH A SERIAL CONFIGURATION
PLANTE: PROGRAM STOPPED AFTER AN ERROR

Have you got some informations about the reasons of this error?
Konsonaut, did you resolve this problem?

Thanks in advance

Kind Regards

Florian

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Runnin Telemac -3d with python script on cluster 9 years 5 months ago #18694

konsonaut OFFLINE openTELEMAC Guru Posts: 414 Thank you received: 144	Hi, yes the hint from Sébastien - adding -DHAVE_MPI in the configuration file - solved the the problem. www.opentelemac.org/index.php/kunena/12-...uster?start=20#15886 Best regards, Clemens
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Runnin Telemac -3d with python script on cluster 9 years 5 months ago #18695

Flo64

Thanks for your answer.

I put in this line : cmd_obj: gfortran -c -O3 -DHAVE_MPI -ffixed-line-length-132 -fconvert=big-endian -frecord-marker=4 <mods> <incs> <f95name>

But now, i have this error:

partitioner.o: In function `partitioner_':
partitioner.F:(.text+0x68c): undefined reference to `metis_partmeshdual_'
collect2: ld a retourn�� 1 code d'��tat d'ex��cution
... The following command failed for the reason above
/PROJETS/LIBRARIES_AND_TOOLS/tools/openmpi/c64/1.8.3/GNU-4.4.7/bin/mpif90 -O3 -fconvert=big-endian -frecord-marker=4 -lpthread -v -lm -o /PROJETS/oceano/softs/Outils_telemac/v7p0r1/builds/ubugfopenmpi/bin/partel declarations_partel.o partitioner.o partel.o util_pares.o pares3d.o homere_partel.o -Wl,--start-group /PROJETS/oceano/softs/Outils_telemac/v7p0r1/builds/ubugfopenmpi/lib/utils/bief/homere_partel.lib /PROJETS/oceano/softs/Outils_telemac/v7p0r1/builds/ubugfopenmpi/lib/utils/special/homere_partel.lib -Wl,--end-group

Did you have this error?
Have you got this type of message?

Thanks

FLorian

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Runnin Telemac -3d with python script on cluster 9 years 5 months ago #18708

yugi OFFLINE openTELEMAC Guru Posts: 851 Thank you received: 244	Hi, You are missing the path to the metis library in your configuration Hope it helps
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