open TELEMAC-MASCARET The mathematically superior suite of solvers

... modifying run command to MPI instruction

... modifying run command to PARTEL instruction

... partitioning base files (geo, conlim, sections, zones and weirs)
    +> /home/mpiuser/telemac-mascaret/v8p0r2/builds/ubugfmpich2/bin/partel < PARTEL.PAR >> partel_T2DGEO.log
STOP 1
runPartition:
   |runPARTEL: Could not split your file T2DGEO (runcode=1) with the error as follows:
   |
   |... The following command failed for the reason above (or below)
   |/home/mpiuser/telemac-mascaret/v8p0r2/builds/ubugfmpich2/bin/partel < PARTEL.PAR >> partel_T2DGEO.log
   |
   |      You may have forgotten to compile PARTEL with the appropriate compiler directive
   |        (add -DHAVE_MPI to your cmd_obj in your configuration file).
   |
   |

   - completed: .../v8p0r2/sources/utils/special/declarations_special.F
[                                                                ]   0%  | ---s

   - completed: .../v8p0r2/sources/utils/partel/c_binding.F
[\\\\\\\\\\\                                                       ]  16%  | 3s

   - completed: .../v8p0r2/sources/utils/special/check_allocate.f
[\\\\\\\\\\\\\\\\\\\\\\                                            ]  33%  | 2s

   - completed: .../v8p0r2/sources/utils/special/plante.F
[\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\                                 ]  50%  | 1s

   - completed: .../v8p0r2/sources/utils/partel/partel_prelim.F
[\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\                      ]  66%  | 1s

   - completed: .../v8p0r2/sources/utils/partel/partitioner.F
[\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\           ]  83%  | 1s
ar: `u' modifier ignored since `D' is the default (see `U')
ar: `u' modifier ignored since `D' is the default (see `U')
Driving: /usr/bin/gfortran -fconvert=big-endian -frecord-marker=4 -lpthread -v -o /home/mpiuser/telemac-mascaret/v8p0r2/builds/ubugfmpich2/bin/partel_prelim c_binding.o partitioner.o partel_prelim.o /home/mpiuser/telemac-mascaret/v8p0r2$Using built-in specs.
COLLECT_GCC=/usr/bin/gfortran
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/7/lto-wrapper
OFFLOAD_TARGET_NAMES=nvptx-none
OFFLOAD_TARGET_DEFAULT=1
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu 7.4.0-1ubuntu1~18.04.1' --with-bugurl=file:///usr/share/doc/gcc-7/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --prefix=/usr --with-gcc-major-vers$Thread model: posix
gcc version 7.4.0 (Ubuntu 7.4.0-1ubuntu1~18.04.1)
Reading specs from /usr/lib/gcc/x86_64-linux-gnu/7/libgfortran.spec
rename spec lib to liborig
COLLECT_GCC_OPTIONS='-fconvert=big-endian' '-frecord-marker=4' '-v' '-o' '/home/mpiuser/telemac-mascaret/v8p0r2/builds/ubugfmpich2/bin/partel_prelim' '-L/usr/lib/openmpi/lib/libmpi.so' '-L/home/mpiuser/telemac-mascaret/metis-5.1.0/lib/l$COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/7/:/usr/lib/gcc/x86_64-linux-gnu/7/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/7/:/usr/lib/gcc/x86_64-linux-gnu/
LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/7/:/usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/7/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/u$COLLECT_GCC_OPTIONS='-fconvert=big-endian' '-frecord-marker=4' '-v' '-o' '/home/mpiuser/telemac-mascaret/v8p0r2/builds/ubugfmpich2/bin/partel_prelim' '-L/usr/lib/openmpi/lib/libmpi.so' '-L/home/mpiuser/telemac-mascaret/metis-5.1.0/lib/l$ /usr/lib/gcc/x86_64-linux-gnu/7/collect2 -plugin /usr/lib/gcc/x86_64-linux-gnu/7/liblto_plugin.so -plugin-opt=/usr/lib/gcc/x86_64-linux-gnu/7/lto-wrapper -plugin-opt=-fresolution=/tmp/ccGZDDW3.res -plugin-opt=-pass-through=-lgcc_s -plu$c_binding.o: In function `__c_binding_MOD_mymetis_partmeshdual':
c_binding.F:(.text+0x1f): undefined reference to `METIS_PartMeshDual'
collect2: error: ld returned 1 exit status

#configure IPv4 details
sudo nano /etc/netplan/01-netcfg.yaml
sudo netplan apply
sudo apt-get update && sudo apt-get upgrade

#set timezone
sudo timedatectl set-timezone Europe/London

#disable IPv6
sudo sysctl -w net.ipv6.conf.all.disable_ipv6=1
sudo nano /etc/default/grub
sudo update-grub

# add software to server.
sudo apt-get install openmpi* libopenmpi-dev gfortran python subversion build-essential mayavi2 nfs-common
sudo apt-get install python-numpy python-scipy python-matplotlib

#make folder and get telemac.
mkdir ~/telemac-mascaret && cd ~/telemac-mascaret
svn co --username ot-svn-public --password telemac1* http://svn.opentelemac.org/svn/opentelemac/tags/v8p0r2

# Copy metis out of telemac optionals directory into ~/source/metis-5.1.0 and build it, installing output to ~/telemac-mascaret/metis-5.1.0:
mkdir ~/source/ && cd ~/telemac-mascaret/v8p0r2/optionals && cp -R ./metis-5.1.0/ ~/source/ && cd ~/source
cmake -D CMAKE_INSTALL_PREFIX=~/telemac-mascaret/metis-5.1.0 .
make
make install

copy & edit the pysource template:
cd ~/telemac-mascaret/v8p0r2/configs/ && cp pysource.template.sh pysource.bop.sh
nano pysource.bop.sh

configure systelcfg:
nano /home/ot/telemac-mascaret/v8p0r2/configs/systel.bop.cfg

sudo reboot

config.py
compileTELEMAC.py