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TOPIC: installation of telemac on a cluster

installation of telemac on a cluster 1 year 5 months ago #42807

  • mourad
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Dear Community,
Our computer engineer (strong linux skills) is facing a problem while compiling Telemac on the university cluster. It seems there are some links missing between MED and HDF libraries. Please find in the attached the configuration files (systel, pysource) and the output of compile_telemac.py
Please feel free for any comment, tip, suggestion...
Thanks in advance !
Mourad
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installation of telemac on a cluster 1 year 5 months ago #42808

  • mourad
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We have re-compiled a minimalist version of hdf5 (1.10.3) and of course recompiled med 4.1.1 with it.
Now, the compile_telemac.py goes for long run but crashes when building the Python API (see the attached)
Regards
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installation of telemac on a cluster 11 months 2 weeks ago #43774

  • GuyMoebs
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Hello all,
I'm in charge of the installation. I'm back on this problem. I start again with a specific installation (especially for Python).
So, now, on Centos 7.9 system, we use :
- gfortran 12.1.0
- hdf5 1.10.3
- MED 4.1.1
- GOTM 2019-06-14
- AED2 1.2
- METIS 5.1
- MUMPS 5.4.1
- PYTHON 3.11.6 (new install from scratch) with only the following packages installed
* numpy==1.26.2
* scipy==1.11.4
* matplotlib==3.8.2
and only their dependances (about ten other modules)

Next, the installation steps are :
1. the script configs/pysource.sh is filled and run ok
2. the script config.py runs fine too.
3. error occurs with the script compile_telemac.py as you can see :


Building the Python API
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

~> Wrap_api built
~> Compiling Modules api
Traceback (most recent call last):
File "/scratch/trinity/shared/apps/ccipl/telemac/telemac-mascaret-v8p4r0/scripts/python3/compilation/compil_tools.py", line 914, in compile_api_f2py
output = check_output(cmd, shell=True, stderr=STDOUT)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/scratch/trinity/shared/apps/ccipl/telemac/python/3.11.6/lib/python3.11/subprocess.py", line 466, in chec k_output
return run(*popenargs, stdout=PIPE, timeout=timeout, check=True,
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

Here we're stuck

Regards,
Guy Moebs
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