Hello,
You should check your boundary conditions file, on lines where you have water entering, starting with 4 5 5, you should have also a 5 further on the line, to impose the tracer, whereas sometimes users wrongly let a 2 that means solid boundaries. I suppose that you have given PRESCRIBED VALUES OF TRACERS for every liquid boundary. If you have given only one value, it may apply to the wrong boundary.
Seeing your steering file would thus be also useful, and you seem to be in primitive equations, and wave equation would be faster.
Regards,
JMH