open TELEMAC-MASCARET The mathematically superior suite of solvers

Hello

I am trying to run telemac 2d and this message appear on screen. Could you please help me with this issue?

Thank you
Carlos



*************************************
* END OF MEMORY ORGANIZATION: *
*************************************

POINT 1341846 IS ON A BOUNDARY
BUT NOT IN THE LIST OF BOUNDARY POINTS
OR THE NUMBER OF LINES IN THE BOUNDARY
CONDITIONS FILE IS GREATER THAN: 12817
NUMBER TAKEN IN THE GEOMETRY FILE

PLANTE: PROGRAM STOPPED AFTER AN ERROR

job aborted:
rank: node: exit code[: error message]
0: UOS-210414.soton.ac.uk: 2: process 0 exited without calling finalize
_____________
runcode::main:
:
|runCode: Fail to run
|C:\opentelemac-mascaret\mpich2\bin\mpiexec.exe -wdir C:\opentelemac-mascaret
\Degree_Coordinates_October_12_2015\t2d_neapmexicotest1.cas_2015-10-16-13h36min4
2s -n 1 C:\opentelemac-mascaret\Degree_Coordinates_October_12_2015\t2d_neapmexic
otest1.cas_2015-10-16-13h36min42s\out_telemac2d.exe
|~~~~~~~~~~~~~~~~~~
|STOP 2
|~~~~~~~~~~~~~~~~~~

Hi
As it's written in the message, your boundary condtion file is probably wrong.
Try to generate a new one and rerun your simulation

Regards

Hello

I had change my boundary conditions and I created a new file However telemac show this message and nothing happened. ]
Note: I left the simulation for more than 48 hours.

Thank you
Carlos

Loading Options and Configurations
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

... parsing configuration file: C:\opentelemac-mascaret\v7p0\configs\systel_para
llel_v7p0.cfg


Running your CAS file for:
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

+> configuration: wing64mpi
+> root: C:\opentelemac-mascaret\v7p0


~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


... reading the main module dictionary

... processing the main CAS file(s)
+> running in English

... checking parallelisation

... handling temporary directories

... checking coupling between codes

... first pass at copying all input files
copying: geo_mexico191015.cli C:\Degrees Coordinates 19 October 2015\t2d
_neap19102015.cas_2015-10-19-16h44min29s\T2DCLI
copying: geo_mexico19102015.slf C:\Degrees Coordinates 19 October 2015\t
2d_neap19102015.cas_2015-10-19-16h44min29s\T2DGEO
re-copying: C:\Degrees Coordinates 19 October 2015\t2d_neap19102015.cas_201
5-10-19-16h44min29s\T2DCAS
copying: telemac2d.dico C:\Degrees Coordinates 19 October 2015\t2d_neap1
9102015.cas_2015-10-19-16h44min29s\T2DDICO

... checking the executable
re-copying: telemac2d.exe C:\Degrees Coordinates 19 October 2015\t2d_neap19
102015.cas_2015-10-19-16h44min29s\out_telemac2d.exe

... modifying run command to MPI instruction

... modifying run command to PARTEL instruction

... handling sortie file(s)


Running your simulation(s) :
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~



C:\opentelemac-mascaret\mpich2\bin\mpiexec.exe -wdir C:\Degrees Coordinates 19 O
ctober 2015\t2d_neap19102015.cas_2015-10-19-16h44min29s -n 1 C:\Degrees Coordina
tes 19 October 2015\t2d_neap19102015.cas_2015-10-19-16h44min29s\out_telemac2d.ex
e

Hi

This is not so surprising as you have space in the directory name!

Regards

Thank you for your reply. I had changes the directory names without spaces and still the same situation.

Thank you
Regards
Carlos


Running your CAS file for:
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

+> configuration: wing64mpi
+> root: C:\opentelemac-mascaret\v7p0


~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


... reading the main module dictionary

... processing the main CAS file(s)
+> running in English

... checking parallelisation

... handling temporary directories

... checking coupling between codes

... first pass at copying all input files
copying: geo_mexico191015.cli C:\opentelemac-mascaret\Degrees_Coordinate
s_19_October_2015\t2d_neap19102015.cas_2015-10-20-09h44min08s\T2DCLI
copying: geo_mexico19102015.slf C:\opentelemac-mascaret\Degrees_Coordina
tes_19_October_2015\t2d_neap19102015.cas_2015-10-20-09h44min08s\T2DGEO
re-copying: C:\opentelemac-mascaret\Degrees_Coordinates_19_October_2015\t2d
_neap19102015.cas_2015-10-20-09h44min08s\T2DCAS
copying: telemac2d.dico C:\opentelemac-mascaret\Degrees_Coordinates_19_O
ctober_2015\t2d_neap19102015.cas_2015-10-20-09h44min08s\T2DDICO

... checking the executable
re-copying: telemac2d.exe C:\opentelemac-mascaret\Degrees_Coordinates_19_Oc
tober_2015\t2d_neap19102015.cas_2015-10-20-09h44min08s\out_telemac2d.exe

... modifying run command to MPI instruction

... modifying run command to PARTEL instruction

... handling sortie file(s)


Running your simulation(s) :
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~



C:\opentelemac-mascaret\mpich2\bin\mpiexec.exe -wdir C:\opentelemac-mascaret\Deg
rees_Coordinates_19_October_2015\t2d_neap19102015.cas_2015-10-20-09h44min08s -n
1 C:\opentelemac-mascaret\Degrees_Coordinates_19_October_2015\t2d_neap19102015.c
as_2015-10-20-09h44min08s\out_telemac2d.exe

So MPI probably wait for the login/password information which is not printed on screen.
To check this point, go into the temp directory and manually enter the command line written in the "running your simulation" part.

Hope this helps

Hello

I had try to write manually the command line a this is the message
Microsoft Windows [Version 6.1.7601]
Copyright (c) 2009 Microsoft Corporation. All rights reserved.

C:\Users\cjmo1e14>cd..

C:\Users>cd..

C:\>cd C:\opentelemac-mascaret\Degrees_Coordinates_19_October_2015

C:\opentelemac-mascaret\Degrees_Coordinates_19_October_2015>telamac2d.py -s t2d_
TEST20102015.cas
'telamac2d.py' is not recognized as an internal or external command,
operable program or batch file.

C:\opentelemac-mascaret\Degrees_Coordinates_19_October_2015>

Thank you
Regards
Carlos

You don't understand my advice.
You should go in the temp directory created by the previous launch which failed. Something like:

cd C:\opentelemac-mascaret\Degrees_Coordinates_19_October_2015\t2d_neap19102015.cas_2015-10-20-09h44min08s
then you run mpiexec directly:

C:\opentelemac-mascaret\mpich2\bin\mpiexec.exe -n 1 out_telemac2d.exe

if this is a problem of login, you will obtain a message

hope this helps

Hello
Very sorry
I have followed your advice and this message appeared
Thank you
Carlos

:\opentelemac-mascaret\Degrees_Coordinates_19_October_2015>mpiexec

Usage:
mpiexec -n <maxprocs> [options] executable [args ...]
mpiexec [options] executable [args ...] : [options] exe [args] : ...
mpiexec -configfile <configfile>

options:

standard:
-n <maxprocs>
-wdir <working directory>
-configfile <filename> -
each line contains a complete set of mpiexec options
including the executable and arguments
-host <hostname>
-path <search path for executable, ; separated>

extensions:
-env <variable value>
-hosts <n host1 host2 ... hostn>
-hosts <n host1 m1 host2 m2 ... hostn mn>
-machinefile <filename> - one host per line, #commented
-localonly <numprocs>
-exitcodes - print the exit codes of processes as they exit
-genvlist <list of env var names a,b,c,...> - pass current values of these vars
-g<local arg name> - global version of local options
genv, gwdir, ghost, gpath, gmap
-file <filename> - old mpich1 job configuration file

examples:
mpiexec -n 4 cpi
mpiexec -n 1 -host foo master : -n 8 worker

For a list of all mpiexec options, execute 'mpiexec -help2'

C:\opentelemac-mascaret\Degrees_Coordinates_19_October_2015>

No, you don't follow my advice

You didn't run mpiexec in the temp directory!
The temp directory has the name of the steering file with the addition of the date and time!

And you just enter mpiexec instead of mpiexec -n 1 out_telemac2d.exe

Regards