Hi Viviana,
I had previously got problem at the intake boundary, where the intake region goes dry the model run used to fail. In order to avoid the problem the intake quantity has to be reduced as per the available water at the intake.
I had handled this problem by modifying the q function in TELEMAC2D, in TELEMAC3D I think you may have to modify the q3 subroutine.
You may refer to the post
www.opentelemac.org/index.php/kunena/16-...me-dry?start=10#8119
where I have attached the fortran program. The program is meant for telemac2d, in telemac3d you have have to similarly modify the q3 subroutine.
Hope this helps,
With best regards,
Gourish