Hello,
Note that with your choice of turbulence models, model 4 on the horizontal is automatically changed into 3, with a message in the listing. So actually you use k-epsilon on horizontal and vertical. The situation you describe, with all velocities in the same direction, can only be transitory, otherwise it would go again mass conservation. What you should see is the free surface slope due to the wind, about exactly like in 2D, and 3D currents which may be complicated, including the upwelling that you expect, but also 2D eddies due to differences of depth that trigger differences of depth-averaged friction.
With best regards,
Jean-Michel Hervouet