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Run Tomawac On hpc
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TOPIC: Run Tomawac On hpc

Run Tomawac On hpc 9 years 4 weeks ago #18685

Hi all,

I tried to run Tomawac on a cluster. But there are following errors. does anyone have idea on solving this problem?
python /home/yxyan/jshi/telemac/opensuse-sources/scripts/python27/runcode.py -f /home/yxyan/jshi/telemac/opensuse-sources/configs/systel.cfg tomawac -s tom_shoal.cas


Loading Options and Configurations
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

... parsing configuration file: /home/yxyan/jshi/telemac/opensuse-sources/configs/systel.cfg


Running your CAS file for:
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

    +> configuration: susgfortranopenmpi
    +> root:          /home/yxyan/jshi/telemac/opensuse-sources/v6p3
    +> version        v6p3
    +> options:       parallel mpi hpc


~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~



Running tom_shoal.cas with tomawac under /home/yxyan/jshi/telemac/opensuse-sources/test/shoal
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

... reading module dictionary
... simulation en Francais avec  tom_shoal.cas
    copying:  tomawac.dico /home/yxyan/jshi/telemac/opensuse-sources/test/shoal/tom_shoal.cas_2015-10-25-11h34min46s/WACDICO
 re-writing:  /home/yxyan/jshi/telemac/opensuse-sources/test/shoal/tom_shoal.cas_2015-10-25-11h34min46s/WACCAS
    copying:  tom_shoal.f /home/yxyan/jshi/telemac/opensuse-sources/test/shoal/tom_shoal.cas_2015-10-25-11h34min46s/wacfort.f
    copying:  geo_shoal.slf /home/yxyan/jshi/telemac/opensuse-sources/test/shoal/tom_shoal.cas_2015-10-25-11h34min46s/WACGEO
    copying:  geo_shoal.cli /home/yxyan/jshi/telemac/opensuse-sources/test/shoal/tom_shoal.cas_2015-10-25-11h34min46s/WACCLI
    copying:  fom_shoal.slf /home/yxyan/jshi/telemac/opensuse-sources/test/shoal/tom_shoal.cas_2015-10-25-11h34min46s/WACREF
 partitioning:  WACGEO                                                         
    +>  /home/yxyan/jshi/telemac/opensuse-sources/v6p3/builds/susgfortranopenmpi/bin/partel < PARTEL.PAR >> partel_WACGEO.log
 partitioning:  WACREF
    +>  /home/yxyan/jshi/telemac/opensuse-sources/v6p3/builds/susgfortranopenmpi/bin/partel < PARTEL.PAR >> partel_WACREF.log


Running your simulation :
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

/usr/local/mvapi2/bin/mpiexec -wdir /home/yxyan/jshi/telemac/opensuse-sources/test/shoal/tom_shoal.cas_2015-10-25-11h34min46s -n 2 /home/yxyan/jshi/telemac/opensuse-sources/test/shoal/tom_shoal.cas_2015-10-25-11h34min46s/out_tom_shoal



=====================================================================================
=   BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
=   EXIT CODE: 32512
=   CLEANING UP REMAINING PROCESSES
=   YOU CAN IGNORE THE BELOW CLEANUP MESSAGES
=====================================================================================
_____________
runcode::main:
      /home/yxyan/jshi/telemac/opensuse-sources/test/shoal:
   |runCode: Fail to run
   |/usr/local/mvapi2/bin/mpiexec -wdir /home/yxyan/jshi/telemac/opensuse-sources/test/shoal/tom_shoal.cas_2015-10-25-11h34min46s -n 2 /home/yxyan/jshi/telemac/opensuse-sources/test/shoal/tom_shoal.cas_2015-10-25-11h34min46s/out_tom_shoal
   |~~~~~~~~~~~~~~~~~~
   |/home/yxyan/jshi/telemac/opensuse-sources/test/shoal/tom_shoal.cas_2015-10-25-11h34min46s/out_tom_shoal: error while loading shared libraries: libmpi.so.1: cannot open shared object file: No such file or directory
   |/home/yxyan/jshi/telemac/opensuse-sources/test/shoal/tom_shoal.cas_2015-10-25-11h34min46s/out_tom_shoal: error while loading shared libraries: libmpi.so.1: cannot open shared object file: No such file or directory
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Run Tomawac On hpc 9 years 4 weeks ago #18686

  • jmhervouet
  • jmhervouet's Avatar
Hello,

There is one thing to check: one test case of Tomawac (it could be shoal) with only 4 elements in the mesh, that cannot be run in parallel. Please find a case with more elements (all others) and see if it works. You could also check what is said in the file partel_WACGEO.log.

With best regards,

Jean-Michel Hervouet
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