Meni, if you use Fudda-Prepro to setup the boundary conditions, it will generate boundary # correctly in the case file.
Also you can figure out the order from the boundary conditions file generated by either BK or Fudda-Prepro. The first group of liquid nodes (non 2 2 2) forms boundary 1, the second group froms boundary 2, and so on.
Lastly, if you set up the order incorrectly your velocity vector should be able to tell you something is wrong in the order.
Hailiang