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TOPIC: Parallel Installation:attempting to use an MPI routine before initial

Parallel Installation:attempting to use an MPI routine before initial 8 years 4 months ago #23104

  • B.Fernandez
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So do I have to write both after the colon? or nothing?
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Parallel Installation:attempting to use an MPI routine before initial 8 years 4 months ago #23105

  • c.coulet
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remove all the register account
try to run the example
It should normally ask you some information
On the first line you should see domain\user with a default value between []
At this moment, just type enter to validate the default account which is normally the account where you logged on windows
then the program will ask you a password
Just enter the password associate to this account and then the program should start.
On my computer, after that and before enter the number of interval I could see the 4 process in the task manager
cpi.jpg

I could run the program many times with different values...
Christophe
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Parallel Installation:attempting to use an MPI routine before initial 8 years 4 months ago #23107

  • B.Fernandez
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Account or user name, in my case there are different, can this be a problem?
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Parallel Installation:attempting to use an MPI routine before initial 8 years 4 months ago #23108

  • c.coulet
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Yes probably!
I don't understand how it's possible...
When you start the computer, you're logging with an account.
This is this account which should be enter in mpi.
Christophe
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Parallel Installation:attempting to use an MPI routine before initial 8 years 4 months ago #23116

  • B.Fernandez
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hi,

I turned off the firewall, and then I could validate the mpiexec. And again the Bumpflu works, so I changed the config file to make TELEMAC works on my own YEN, so I have this configuration. Every thing looks apparently working but it s the same time 30 seconds with and without parallel.
What am I doing wrong now?
12.png

regards,
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Parallel Installation:attempting to use an MPI routine before initial 8 years 4 months ago #23117

  • c.coulet
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Hi
Could you detail the test you made? how many processors in parallel?
How your model looks like, number of elements, number of time step...

In parallel, you need time for the partitioning and the recollection and also for communication between processors during the run...

regards
Christophe
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Parallel Installation:attempting to use an MPI routine before initial 8 years 4 months ago #23106

  • B.Fernandez
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hi,

how can I know how many I have, bc yesterday I had it well, and today I tried to install it again to see if i solve other problems,and then came more problems, how can I know where can I find them and remove them. ???

regards,
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Parallel Problem: 7 years 10 months ago #24802

  • huyquangtran
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Hi,

I probably got the same probem with B.Fernandez, but on Linux HPC cluster.
When I run a test case at: ~examples/telemac2d/cone
I got errors below, and the configuration file attached. I have read through this post, but I can't find the final solution for it.

Does anyone can help me?

Thanks & Best Regards
Huy


lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/local/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/crtend.o /lib/../lib64/crtn.o
created: t2d_cone
re-copying: t2d_cone /home/huyquangtran/telemac/v7p2/examples/telemac2d/cone/t2d_cone.cas_2017-01-15-13h40min09s/out_t2d_cone
... modifying run command to MPI instruction
... modifying run command to PARTEL instruction
... partitioning base files (geo, conlim, sections, zones and weirs)
+> /home/huyquangtran/telemac/v7p2/builds/uniopenmpi/bin/partel < PARTEL.PAR >> partel_T2DGEO.log
STOP 1
runPartition:
|runPARTEL: Could not split your file T2DGEO (runcode=1) with the error as follows:
|... The following command failed for the reason above (or below)
|/home/huyquangtran/telemac/v7p2/builds/uniopenmpi/bin/partel < PARTEL.PAR >> partel_T2DGEO.log
| You may have forgotten to compile PARTEL with the appropriate compiler directive
| (add -DHAVE_MPI to your cmd_obj in your configuration file).
|Here is the log:
| +
+
| PARTEL/PARRES: TELEMAC METISOLOGIC PARTITIONER
| REBEKKA KOPMANN & JACEK A. JANKOWSKI (BAW)
|
| JEAN-MICHEL HERVOUET (LNHE)
| CHRISTOPHE DENIS (SINETICS)
| YOANN AUDOUIN (LNHE)
| PARTEL (C) COPYRIGHT 2000-2002
| BUNDESANSTALT FUER WASSERBAU, KARLSRUHE
| METIS 5.0.2 (C) COPYRIGHT 2012
| REGENTS OF THE UNIVERSITY OF MINNESOTA
| BIEF V7P2R0 (C) COPYRIGHT 2012 EDF
| +
+
| MAXIMUM NUMBER OF PARTITIONS: 100000
| +
+
| --INPUT FILE NAME <INPUT_NAME>:
| INPUT: T2DGEO
| --INPUT FILE FORMAT <INPFORMAT> [MED,SERAFIN,SERAFIND]:
| INPUT: SERAFIN
| --BOUNDARY CONDITIONS FILE NAME:
| INPUT: T2DCLI
|--NUMBER OF PARTITIONS <NPARTS> [2 -100000]:
| INPUT: 2
| PARTITIONING METHOD <PMETHOD> [1 (METIS) OR 2 (SCOTCH)]:
| --INPUT: 1
| --CONTROL SECTIONS FILE NAME (OR RETURN) :
| NO SECTIONS
|
| --CONTROL ZONES FILE NAME (OR RETURN) :
|
| NO ZONES
|
| --WEIR FILE NAME (OR RETURN) :
| NO WEIRS
| --GEOMETRY FILE NAME <INPUT_NAME>:
| INPUT: T2DGEO
|
| --GEOMETRY FILE FORMAT <GEOFORMAT> [MED,SERAFIN,SERAFIND]:
| INPUT: SERAFIN
| +---- PARTEL: BEGINNING
+
| READ_MESH_INFO: TITLE= TELEMAC 2D : GOUTTE D'EAU DANS UN BASSIN$
| NUMBER OF ELEMENTS: 8978
| NUMBER OF POINTS: 4624
| FORMAT NOT INDICATED IN TITLE
| ONE-LEVEL MESH.
|
| NDP NODES PER ELEMENT: 3
|
| ELEMENT TYPE : 10
|
| NPOIN NUMBER OF MESH NODES: 4624
|
| NELEM NUMBER OF MESH ELEMENTS: 8978
| THE INPUT FILE ASSUMED TO BE 2D
|
| THERE ARE 1 TIME-DEPENDENT RECORDINGS
|
| THE MESH PARTITIONING STEP STARTS
|
| BEGIN PARTITIONING WITH METIS
|
| ERROR: TRY TO RUN PARTEL WITH A SERIAL CONFIGURATION
| PLANTE: PROGRAM STOPPED AFTER AN ERROR
|
| RETURNING EXIT CODE: 2
Attachments:
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Parallel Problem: 7 years 10 months ago #24805

  • yugi
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It looks like your are running with the serial configuration.
Can you post the beginning of the listing and your command?
There are 10 types of people in the world: those who understand binary, and those who don't.
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Parallel Problem: 7 years 10 months ago #24806

  • huyquangtran
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Hi Yoann,

This is my command, and the listing:

[huyquangtran@spartan cone]$ python /home/huyquangtran/telemac/v7p2/scripts/python27/runcode.py telemac2d -s -c uniopenmpi --ncsize=2 t2d_cone.cas


Loading Options and Configurations
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

_ _ _
| | (_) (_)
_ _ _ __ | | __ _ __ ___ __ __ _ __ _ __ ___ __ __ _ ___ _ ___ _ __
| | | || '_ \ | |/ /| '_ \ / _ \ \ \ /\ / /| '_ \ | '__| / _ \\ \ / /| |/ __|| | / _ \ | '_ \
| |_| || | | || < | | | || (_) | \ V V / | | | | | | | __/ \ V / | |\__ \| || (_) || | | |
\__,_||_| |_||_|\_\|_| |_| \___/ \_/\_/ |_| |_| |_| \___| \_/ |_||___/|_| \___/ |_| |_|


... parsing configuration file: /home/huyquangtran/telemac/v7p2/configs/systel.mint.cfg


Running your CAS file for:
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

+> configuration: uniopenmpi
+> root: /home/huyquangtran/telemac/v7p2


~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


... reading the main module dictionary

... processing the main CAS file(s)
+> running in English

... handling temporary directories

... checking coupling between codes

... checking parallelisation

... first pass at copying all input files
copying: t2d_cone.f /home/huyquangtran/telemac/v7p2/examples/telemac2d/cone/t2d_cone.cas_2017-01-16-18h43min57s/t2dfort.f
copying: geo_cone.cli /home/huyquangtran/telemac/v7p2/examples/telemac2d/cone/t2d_cone.cas_2017-01-16-18h43min57s/T2DCLI
copying: geo_cone.slf /home/huyquangtran/telemac/v7p2/examples/telemac2d/cone/t2d_cone.cas_2017-01-16-18h43min57s/T2DGEO
re-copying: /home/huyquangtran/telemac/v7p2/examples/telemac2d/cone/t2d_cone.cas_2017-01-16-18h43min57s/T2DCAS
copying: telemac2d.dico /home/huyquangtran/telemac/v7p2/examples/telemac2d/cone/t2d_cone.cas_2017-01-16-18h43min57s/T2DDICO

... checking the executable
Driving: gfortran -fconvert=big-endian -frecord-marker=4 -lpthread -v -o t2d_cone t2dfort.o /home/huyquangtran/telemac/v7p2/builds/uniopenmpi/lib/telemac2d/homere_telemac2d.lib /home/huyquangtran/telemac/v7p2/builds/uniopenmpi/lib/waqtel/homere_telemac2d.lib /home/huyquangtran/telemac/v7p2/builds/uniopenmpi/lib/tomawac/homere_telemac2d.lib /home/huyquangtran/telemac/v7p2/builds/uniopenmpi/lib/sisyphe/homere_telemac2d.lib /home/huyquangtran/telemac/v7p2/builds/uniopenmpi/lib/stbtel/homere_telemac2d.lib /home/huyquangtran/telemac/v7p2/builds/uniopenmpi/lib/utils/ad/homere_telemac2d.lib /home/huyquangtran/telemac/v7p2/builds/uniopenmpi/lib/nestor/homere_telemac2d.lib /home/huyquangtran/telemac/v7p2/builds/uniopenmpi/lib/utils/bief/homere_telemac2d.lib /home/huyquangtran/telemac/v7p2/builds/uniopenmpi/lib/utils/damocles/homere_telemac2d.lib /home/huyquangtran/telemac/v7p2/builds/uniopenmpi/lib/utils/hermes/homere_telemac2d.lib /home/huyquangtran/telemac/v7p2/builds/uniopenmpi/lib/utils/parallel/homere_telemac2d.lib /home/huyquangtran/telemac/v7p2/builds/uniopenmpi/lib/utils/special/homere_telemac2d.lib -L/usr/local/easybuild/software/OpenMPI/1.10.2-GCC-4.9.2-openib/lib/libmpi.so -L/usr/local/easybuild/software/METIS/5.1.0-GCC-4.9.2/lib/libmetis.a -l gfortran -l m -shared-libgcc
Using built-in specs.
COLLECT_GCC=gfortran
COLLECT_LTO_WRAPPER=/usr/local/easybuild/software/GCC/4.9.2/libexec/gcc/x86_64-unknown-linux-gnu/4.9.2/lto-wrapper
Target: x86_64-unknown-linux-gnu
Configured with: ../configure --enable-languages=c,c++,fortran --enable-lto --enable-checking=release --disable-multilib --enable-shared=yes --enable-static=yes --enable-threads=posix --enable-gold=default --enable-plugins --enable-ld --with-plugin-ld=ld.gold --enable-bootstrap --prefix=/usr/local/easybuild/software/GCC/4.9.2 --with-local-prefix=/usr/local/easybuild/software/GCC/4.9.2
Thread model: posix
gcc version 4.9.2 (GCC)
Reading specs from /usr/local/easybuild/software/GCC/4.9.2/lib64/../lib64/libgfortran.spec
rename spec lib to liborig
COLLECT_GCC_OPTIONS='-fconvert=big-endian' '-frecord-marker=4' '-v' '-o' 't2d_cone' '-L/usr/local/easybuild/software/OpenMPI/1.10.2-GCC-4.9.2-openib/lib/libmpi.so' '-L/usr/local/easybuild/software/METIS/5.1.0-GCC-4.9.2/lib/libmetis.a' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
COMPILER_PATH=/usr/local/easybuild/software/GCC/4.9.2/libexec/gcc/x86_64-unknown-linux-gnu/4.9.2/:/usr/local/easybuild/software/GCC/4.9.2/libexec/gcc/x86_64-unknown-linux-gnu/4.9.2/:/usr/local/easybuild/software/GCC/4.9.2/libexec/gcc/x86_64-unknown-linux-gnu/:/usr/local/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/:/usr/local/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/
LIBRARY_PATH=/usr/local/easybuild/software/GCC/4.9.2/lib64/../lib64/:/usr/local/easybuild/software/GCC/4.9.2/lib/../lib64/:/usr/local/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/:/usr/local/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/usr/local/easybuild/software/OpenMPI/1.10.2-intel-2016.u3/lib/:/usr/local/easybuild/software/imkl/11.3.3.210-iimpi-2016.u3-GCC-4.9.2/mkl/lib/intel64/:/usr/local/easybuild/software/imkl/11.3.3.210-iimpi-2016.u3-GCC-4.9.2/lib/intel64/:/usr/local/easybuild/software/impi/5.1.3.223-iccifort-2016.u3-GCC-4.9.2/lib64/:/usr/local/easybuild/software/ifort/2016.u3-GCC-4.9.2/lib/intel64/:/usr/local/easybuild/software/ifort/2016.u3-GCC-4.9.2/daal/lib/intel64_lin/:/usr/local/easybuild/software/ifort/2016.u3-GCC-4.9.2/debugger_2016/libipt/intel64/lib/:/usr/local/easybuild/software/ifort/2016.u3-GCC-4.9.2/tbb/lib/intel64/gcc4.4/:/usr/local/easybuild/software/ifort/2016.u3-GCC-4.9.2/mkl/lib/intel64/:/usr/local/easybuild/software/ifort/2016.u3-GCC-4.9.2/ipp/lib/intel64/:/usr/local/easybuild/software/ifort/2016.u3-GCC-4.9.2/lib/:/usr/local/easybuild/software/icc/2016.u3-GCC-4.9.2/lib/intel64/:/usr/local/easybuild/software/icc/2016.u3-GCC-4.9.2/daal/lib/intel64_lin/:/usr/local/easybuild/software/icc/2016.u3-GCC-4.9.2/debugger_2016/libipt/intel64/lib/:/usr/local/easybuild/software/icc/2016.u3-GCC-4.9.2/tbb/lib/intel64/gcc4.4/:/usr/local/easybuild/software/icc/2016.u3-GCC-4.9.2/mkl/lib/intel64/:/usr/local/easybuild/software/icc/2016.u3-GCC-4.9.2/ipp/lib/intel64/:/usr/local/easybuild/software/icc/2016.u3-GCC-4.9.2/lib/:/usr/local/easybuild/software/GCC/4.9.2/lib64/:/usr/local/easybuild/software/GCC/4.9.2/lib/:/usr/local/easybuild/software/binutils/2.25/lib/:/usr/local/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/../../../:/lib/:/usr/lib/
COLLECT_GCC_OPTIONS='-fconvert=big-endian' '-frecord-marker=4' '-v' '-o' 't2d_cone' '-L/usr/local/easybuild/software/OpenMPI/1.10.2-GCC-4.9.2-openib/lib/libmpi.so' '-L/usr/local/easybuild/software/METIS/5.1.0-GCC-4.9.2/lib/libmetis.a' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
/usr/local/easybuild/software/GCC/4.9.2/libexec/gcc/x86_64-unknown-linux-gnu/4.9.2/collect2 -plugin /usr/local/easybuild/software/GCC/4.9.2/libexec/gcc/x86_64-unknown-linux-gnu/4.9.2/liblto_plugin.so -plugin-opt=/usr/local/easybuild/software/GCC/4.9.2/libexec/gcc/x86_64-unknown-linux-gnu/4.9.2/lto-wrapper -plugin-opt=-fresolution=/tmp/cchFpEsi.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lquadmath -plugin-opt=-pass-through=-lm -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --eh-frame-hdr -m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 -o t2d_cone /lib/../lib64/crt1.o /lib/../lib64/crti.o /usr/local/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/crtbegin.o -L/usr/local/easybuild/software/OpenMPI/1.10.2-GCC-4.9.2-openib/lib/libmpi.so -L/usr/local/easybuild/software/METIS/5.1.0-GCC-4.9.2/lib/libmetis.a -L/usr/local/easybuild/software/GCC/4.9.2/lib64/../lib64 -L/usr/local/easybuild/software/GCC/4.9.2/lib/../lib64 -L/usr/local/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2 -L/usr/local/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/local/easybuild/software/OpenMPI/1.10.2-intel-2016.u3/lib -L/usr/local/easybuild/software/imkl/11.3.3.210-iimpi-2016.u3-GCC-4.9.2/mkl/lib/intel64 -L/usr/local/easybuild/software/imkl/11.3.3.210-iimpi-2016.u3-GCC-4.9.2/lib/intel64 -L/usr/local/easybuild/software/impi/5.1.3.223-iccifort-2016.u3-GCC-4.9.2/lib64 -L/usr/local/easybuild/software/ifort/2016.u3-GCC-4.9.2/lib/intel64 -L/usr/local/easybuild/software/ifort/2016.u3-GCC-4.9.2/daal/lib/intel64_lin -L/usr/local/easybuild/software/ifort/2016.u3-GCC-4.9.2/debugger_2016/libipt/intel64/lib -L/usr/local/easybuild/software/ifort/2016.u3-GCC-4.9.2/tbb/lib/intel64/gcc4.4 -L/usr/local/easybuild/software/ifort/2016.u3-GCC-4.9.2/mkl/lib/intel64 -L/usr/local/easybuild/software/ifort/2016.u3-GCC-4.9.2/ipp/lib/intel64 -L/usr/local/easybuild/software/ifort/2016.u3-GCC-4.9.2/lib -L/usr/local/easybuild/software/icc/2016.u3-GCC-4.9.2/lib/intel64 -L/usr/local/easybuild/software/icc/2016.u3-GCC-4.9.2/daal/lib/intel64_lin -L/usr/local/easybuild/software/icc/2016.u3-GCC-4.9.2/debugger_2016/libipt/intel64/lib -L/usr/local/easybuild/software/icc/2016.u3-GCC-4.9.2/tbb/lib/intel64/gcc4.4 -L/usr/local/easybuild/software/icc/2016.u3-GCC-4.9.2/mkl/lib/intel64 -L/usr/local/easybuild/software/icc/2016.u3-GCC-4.9.2/ipp/lib/intel64 -L/usr/local/easybuild/software/icc/2016.u3-GCC-4.9.2/lib -L/usr/local/easybuild/software/GCC/4.9.2/lib64 -L/usr/local/easybuild/software/GCC/4.9.2/lib -L/usr/local/easybuild/software/binutils/2.25/lib -L/usr/local/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/../../.. -lpthread t2dfort.o /home/huyquangtran/telemac/v7p2/builds/uniopenmpi/lib/telemac2d/homere_telemac2d.lib /home/huyquangtran/telemac/v7p2/builds/uniopenmpi/lib/waqtel/homere_telemac2d.lib /home/huyquangtran/telemac/v7p2/builds/uniopenmpi/lib/tomawac/homere_telemac2d.lib /home/huyquangtran/telemac/v7p2/builds/uniopenmpi/lib/sisyphe/homere_telemac2d.lib /home/huyquangtran/telemac/v7p2/builds/uniopenmpi/lib/stbtel/homere_telemac2d.lib /home/huyquangtran/telemac/v7p2/builds/uniopenmpi/lib/utils/ad/homere_telemac2d.lib /home/huyquangtran/telemac/v7p2/builds/uniopenmpi/lib/nestor/homere_telemac2d.lib /home/huyquangtran/telemac/v7p2/builds/uniopenmpi/lib/utils/bief/homere_telemac2d.lib /home/huyquangtran/telemac/v7p2/builds/uniopenmpi/lib/utils/damocles/homere_telemac2d.lib /home/huyquangtran/telemac/v7p2/builds/uniopenmpi/lib/utils/hermes/homere_telemac2d.lib /home/huyquangtran/telemac/v7p2/builds/uniopenmpi/lib/utils/parallel/homere_telemac2d.lib /home/huyquangtran/telemac/v7p2/builds/uniopenmpi/lib/utils/special/homere_telemac2d.lib -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/local/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/crtend.o /lib/../lib64/crtn.o
created: t2d_cone
re-copying: t2d_cone /home/huyquangtran/telemac/v7p2/examples/telemac2d/cone/t2d_cone.cas_2017-01-16-18h43min57s/out_t2d_cone

... modifying run command to MPI instruction

... modifying run command to PARTEL instruction

... partitioning base files (geo, conlim, sections, zones and weirs)
+> /home/huyquangtran/telemac/v7p2/builds/uniopenmpi/bin/partel < PARTEL.PAR >> partel_T2DGEO.log
STOP 1
runPartition:
|runPARTEL: Could not split your file T2DGEO (runcode=1) with the error as follows:
|
|... The following command failed for the reason above (or below)
|/home/huyquangtran/telemac/v7p2/builds/uniopenmpi/bin/partel < PARTEL.PAR >> partel_T2DGEO.log
|
| You may have forgotten to compile PARTEL with the appropriate compiler directive
| (add -DHAVE_MPI to your cmd_obj in your configuration file).
|
|Here is the log:
|
|
| +
+
|
| PARTEL/PARRES: TELEMAC METISOLOGIC PARTITIONER
|
|
|
| REBEKKA KOPMANN & JACEK A. JANKOWSKI (BAW)
|
| JEAN-MICHEL HERVOUET (LNHE)
|
| CHRISTOPHE DENIS (SINETICS)
|
| YOANN AUDOUIN (LNHE)
|
| PARTEL (C) COPYRIGHT 2000-2002
|
| BUNDESANSTALT FUER WASSERBAU, KARLSRUHE
|
|
|
| METIS 5.0.2 (C) COPYRIGHT 2012
|
| REGENTS OF THE UNIVERSITY OF MINNESOTA
|
|
|
| BIEF V7P2R0 (C) COPYRIGHT 2012 EDF
|
| +
+
|
|
|
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