Hello,
This error message is typical of a problem when using MURD schemes (like N-type, PSI-type, LIPS, i.e. 4, 5 etc, except the method of characteristics or SUPG).
First things to try are to decrease the time step and see if no water may occur or not in the domain.
To be able to run you example, I have had to add a few options which are used for the 2D example. Please see the enclosed steering file.
Some of them are the default one for TELEMAC-3D (NON-HYDROSTATIC VERSION = YES) or a recommended value (FREE SURFACE GRADIENT COMPATIBILITY = 0.9).
The computation is running until 7,200 s. I let you check if the results are OK or not and maybe tune your steering file.
Hope this helps,
Chi-Tuan