Hello Maria,
No, the message is normal if the program does not stop, a sub-domain at least has found that the point is inside it. You should see in the listings that the points are recognised by at least one sub-domain (but the listings of processors others than 0 are erased if the run is OK, so not easy...). A solution could be to put subroutine proxim (from bief) in your FORTRAN FILE, and change the WRITE(LU,*) into PRINT*, so that the messages are not redirected.
Then the problem is to understand whether these sources are taken into account or not, at least you should see the discharges in the mass balance, even in processor 0 listing (the mass balance sums all processors, so is the same on all processors).
I hope it helps...
Jean-Michel