TELEMAC-MASCARET Forum: Compiling on Ubuntu 18.10 (4/6)

Compiling on Ubuntu 18.10 5 years 8 months ago #33176

Mustermann OFFLINE Expert Boarder Posts: 268 Thank you received: 4	I tried so, but somehow get the same error. Attached is my .cfg file I use maybe there is something else to adjust? Attachments: systel.ubuntu.txt (3KB)
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Compiling on Ubuntu 18.10 5 years 8 months ago #33177

yugi OFFLINE openTELEMAC Guru Posts: 851 Thank you received: 244	Keep libmetis in your libs_all. And keep incs_all empty. I am surprised it worked those keyword are mandatory. If you still have the error then something is wrong with your mpi. Or you need to load other libraries.
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Compiling on Ubuntu 18.10 5 years 8 months ago #33178

Mustermann OFFLINE Expert Boarder Posts: 268 Thank you received: 4	Did not work as well. I will try to recompile metis with gcc and compile telemac with gcc instead of intel.
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Compiling on Ubuntu 18.10 5 years 8 months ago #33179

Mustermann OFFLINE Expert Boarder Posts: 268 Thank you received: 4	I just recompiled metis with gcc and changed my config file (attached). Somehow I still get the same issue? Could v8p0r1 be the cause? Which libraries would you recommend for Ubuntu 18.10? Attachments: compile_20...13-2.txt (321KB) systel.ubuntugcc.txt (3KB)
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Compiling on Ubuntu 18.10 5 years 8 months ago #33180

yugi
OFFLINE
openTELEMAC Guru
Posts: 851
Thank you received: 244

How did you compile metis ?
Could you post the command you typed ?

As for your systel.cfg i would change it that way:

[ubugfmpich]
#
brief: parallel mode, using mpiexec directly (of the MPICH2 package).
       The only difference with the scalar versions (optimised) is the presence
       of the key mpi_cmdexec and the -DHAVE_MPI compilation directive.
       Of course, you also need the key par_cmdexec.
       Finally, note that this configuration also works whether
       processor is 0 or 1.
#
mpi_cmdexec:   /usr/bin/mpiexec -wdir <wdir> -n <ncsize> <exename>
#
cmd_obj:    /usr/bin/mpif90 -c -g -fbounds-check -Wall -fbacktrace -finit-real=nan -DHAVE_MPI -fconvert=big-endian -frecord-marker=4 <mods> <incs> <f95name>
cmd_exe:    /usr/bin/mpif90 -fconvert=big-endian -frecord-marker=4 -lm -o <exename> <objs>  <libs>
#
incs_all:  
libs_all:  ~/Telemac/v8p0r1/optionals/metis-5.1.0/build/Linux-x86_64/libmetis/libmetis.a

There are 10 types of people in the world: those who understand binary, and those who don't.

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Compiling on Ubuntu 18.10 5 years 8 months ago #33181

Mustermann OFFLINE Expert Boarder Posts: 268 Thank you received: 4	I compiled metis as follows Changed the makefile with nano prefix = ~/Telemac/v8p0r1/optionals/metis-5.1.0/build/ cc = gcc in the folder with the Makefile is used the next two commands to compile metis make config make The same procedure has been used for intel compilers but I changed cc = icc
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Compiling on Ubuntu 18.10 5 years 8 months ago #33182

yugi OFFLINE openTELEMAC Guru Posts: 851 Thank you received: 244	Can you try installing it following the guide here: wiki.opentelemac.org/doku.php?id=installation_linux_metis And see if it make a difference. Also do a make clean before all that.
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Compiling on Ubuntu 18.10 5 years 8 months ago #33183

Mustermann OFFLINE Expert Boarder Posts: 268 Thank you received: 4	I would love to follow this instructions but I have no clue where to find the libmetis.a file so that I could tell cmake where to install.
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Compiling on Ubuntu 18.10 5 years 8 months ago #33184

yugi OFFLINE openTELEMAC Guru Posts: 851 Thank you received: 244	I am not sure I understand what you are saying. to cmake you must give a path where he will install. So this a path you create for example /home/yugi/opt/metis-5.1.0/arch/S9 is what I use. What you are giving is the folder were make install will put all the files you need to use metis.
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Compiling on Ubuntu 18.10 5 years 8 months ago #33185

Mustermann
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Expert Boarder
Posts: 268
Thank you received: 4

That's what I thought as well but when entering:

cmake -D CMAKE_INSTALL_PREFIX=~/Telemac/v8p0r1/optionals/metis-5.1.0/build DSHARED=TRUE

inside the metis-5.1.0 folder which comes with the src code I get the following error.

CMake Error: The source directory "/home/clemens/Telemac/v8p0r1/optionals/metis-5.1.0/DSHARED=TRUE" does not exist.
Specify --help for usage, or press the help button on the CMake GUI.

Which somehow makes no sense to me.

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