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Error when Running simulation
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TOPIC: Error when Running simulation

Error when Running simulation 11 years 4 months ago #9603

  • VictorOpenOcean
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Hy, I installed openTELEMAC on my computer under Linux by following the tutorial, but when I run validation tests ( validation_v6p1 ), few work but most of them return me this error:

Running your simulation :
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


/home/victor/opentelemac/v6p2/validation_v6p1/telemac2d/tel2d_v6p1/012_bumpcri/t2d_bumpcri_v1p0.cas_2013-07-08-07h06min17s/out_t2d_bumpcri_v1p0
_____________
runcode::main:
/home/victor/opentelemac/v6p2/validation_v6p1/telemac2d/tel2d_v6p1/012_bumpcri:
|runCAS: fail to run
| /home/victor/opentelemac/v6p2/validation_v6p1/telemac2d/tel2d_v6p1/012_bumpcri/t2d_bumpcri_v1p0.cas_2013-07-08-07h06min17s/out_t2d_bumpcri_v1p0

Is it just a bad installation?
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Error when Running simulation 11 years 4 months ago #9605

  • cyamin
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Hi Victor,

Have you installed v6p2 version of Telemac or v6p1? If you have installed v6p2, then you should download the validation cases for the v6p2 version of telemac from the repository.

Here is the address to use in your repository browser:
svn.opentelemac.org/svn/opentelemac/vali...telemac2d/tel2d_v6p2

Best Regards,
Costas
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Error when Running simulation 11 years 4 months ago #9616

  • VictorOpenOcean
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Thanks, but even with v6p2 validations, it always returns the same error.
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Error when Running simulation 11 years 4 months ago #9618

  • cyamin
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Then it appears to be an installation problem and I have no experience in Linux. I hope that somebody else can help you out.

Regards,
Costas
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Error when Running simulation 11 years 4 months ago #9625

  • yugi
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Hi,

Could you show me the rest of the output.
Something else could you go in one of the temporary file and directly run the execution file it sould be "out_something"

Cheers,
Yoann
There are 10 types of people in the world: those who understand binary, and those who don't.
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Error when Running simulation 11 years 4 months ago #9627

  • VictorOpenOcean
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here's the rest:

python ./pytel/telemac2d.py ./validation_v6p2/telemac2d/tel2d_v6p2/023_estimation/t2d_estimation.cas


Loading Options and Configurations
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

... parsing configuration file: /home/victor/opentelemac/v6p2/config/systel.cfg


Running your CAS file for:
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

+> configuration: ubugfopenmpi
+> root: /home/victor/opentelemac/v6p2
+> version v6p2


~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~



Running t2d_estimation.cas with telemac2d under /home/victor/opentelemac/v6p2/validation_v6p2/telemac2d/tel2d_v6p2/023_estimation
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

... reading module dictionary
... simulation en Francais avec t2d_estimation.cas
copying: t2d_estimation.f /home/victor/opentelemac/v6p2/validation_v6p2/telemac2d/tel2d_v6p2/023_estimation/t2d_estimation.cas_2013-07-08-14h23min34s/t2dfort.f
re-writing: /home/victor/opentelemac/v6p2/validation_v6p2/telemac2d/tel2d_v6p2/023_estimation/t2d_estimation.cas_2013-07-08-14h23min34s/T2DCAS
copying: telemac2dv6p2.dico /home/victor/opentelemac/v6p2/validation_v6p2/telemac2d/tel2d_v6p2/023_estimation/t2d_estimation.cas_2013-07-08-14h23min34s/T2DDICO
copying: t2d_estimation.qsl /home/victor/opentelemac/v6p2/validation_v6p2/telemac2d/tel2d_v6p2/023_estimation/t2d_estimation.cas_2013-07-08-14h23min34s/T2DIMP
copying: geo_estimation.slf /home/victor/opentelemac/v6p2/validation_v6p2/telemac2d/tel2d_v6p2/023_estimation/t2d_estimation.cas_2013-07-08-14h23min34s/T2DGEO
copying: geo_estimation.cli /home/victor/opentelemac/v6p2/validation_v6p2/telemac2d/tel2d_v6p2/023_estimation/t2d_estimation.cas_2013-07-08-14h23min34s/T2DCLI
copying: f2d_estimation.slf /home/victor/opentelemac/v6p2/validation_v6p2/telemac2d/tel2d_v6p2/023_estimation/t2d_estimation.cas_2013-07-08-14h23min34s/T2DREF


Running your simulation :
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~


/usr/bin/mpiexec.mpich2 -wdir /home/victor/opentelemac/v6p2/validation_v6p2/telemac2d/tel2d_v6p2/023_estimation/t2d_estimation.cas_2013-07-08-14h23min34s -n 1 /home/victor/opentelemac/v6p2/validation_v6p2/telemac2d/tel2d_v6p2/023_estimation/t2d_estimation.cas_2013-07-08-14h23min34s/out_t2d_estimation
_____________
runcode::main:
/home/victor/opentelemac/v6p2/validation_v6p2/telemac2d/tel2d_v6p2/023_estimation:
|runCAS: fail to run
| /usr/bin/mpiexec.mpich2 -wdir /home/victor/opentelemac/v6p2/validation_v6p2/telemac2d/tel2d_v6p2/023_estimation/t2d_estimation.cas_2013-07-08-14h23min34s -n 1 /home/victor/opentelemac/v6p2/validation_v6p2/telemac2d/tel2d_v6p2/023_estimation/t2d_estimation.cas_2013-07-08-14h23min34s/out_t2d_estimation

and the out file is too big to put it on the forum.
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Error when Running simulation 11 years 4 months ago #9638

  • yugi
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Could you enter the folder :
/home/victor/opentelemac/v6p2/validation_v6p2/telemac2d/tel2d_v6p2/023_estimation/t2d_estimation.cas_2013-07-08-14h23min34s

And run the following command:
/usr/bin/mpiexec.mpich2 -wdir /home/victor/opentelemac/v6p2/validation_v6p2/telemac2d/tel2d_v6p2/023_estimation/t2d_estimation.cas_2013-07-08-14h23min34s -n 1 /home/victor/opentelemac/v6p2/validation_v6p2/telemac2d/tel2d_v6p2/023_estimation/t2d_estimation.cas_2013-07-08-14h23min34s/out_t2d_estimation
And post the error message here.
The error message was not displayed in version v6p1 it is now.

Cheers,
Yoann
There are 10 types of people in the world: those who understand binary, and those who don't.
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Error when Running simulation 11 years 4 months ago #9644

  • VictorOpenOcean
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Here's the error message:
Fatal error in PMPI_Comm_rank: Invalid communicator, error stack:
PMPI_Comm_rank(109): MPI_Comm_rank(comm=0x0, rank=0xca0f74) failed
PMPI_Comm_rank(66).: Invalid communicator
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Error when Running simulation 11 years 4 months ago #9667

  • yugi
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This means that somthing was wrong when you installed telemac.
Could you post your systel.cfg.

Thanks,
Yoann
There are 10 types of people in the world: those who understand binary, and those who don't.
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Error when Running simulation 11 years 4 months ago #9669

  • VictorOpenOcean
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Yes I fixed the steering file, now I have only a problem with the parallelization

Here's my systel.cfg:
# _____ _______________________________
# ____/ TELEMAC Project Definitions /______________________________/
#
[Configurations]
configs: ubugfortrans ubugfopenmpi
# ubunsun32s ubunsun32p
# _____ ____________________________________
# ____/ Ubuntu gfortran scalar /___________________________________/
[ubugfortrans]
#
root: /home/victor/opentelemac/v6p2
version: v6p2
language: 2
modules: update system
options:
#
cmd_obj: gfortran -c -O3 -ffixed-line-length-132 -fconvert=big-endian -frecord-marker=4 <mods> <incs> <f95name>
cmd_lib: ar cru <libname> <objs>
cmd_exe: gfortran -fconvert=big-endian -frecord-marker=4 -v -o <exename> <objs> -Wl,--start-group <libs> -Wl,--end-group
#
mods_all: -I <config>
#
sfx_zip: .gztar
sfx_lib: .lib
sfx_obj: .o
sfx_mod: .mod
sfx_exe:
#
# also possible val_root: <root>/../validation
val_root: <modpath>/validation
val_rank: all
# also possible val_rank: <3 >7 6
#
# _____ ___________________________________
# ____/ Ubuntu gfortran openMPI /__________________________________/
[ubugfopenmpi]
#
root: /home/victor/opentelemac/v6p2
version: v6p2
language: 2
modules: update system
#
options: parallel mpi
#
par_cmdexec: <config>/partel < PARTEL.PAR >> <partel.log>
#
mpi_cmdexec: /usr/bin/mpiexec -wdir <wdir> -n <ncsize> <exename>
mpi_hosts:
#
cmd_obj: gfortran -c -O3 -ffixed-line-length-132 -fconvert=big-endian -frecord-marker=4 <mods> <incs> <f95name>
cmd_lib: ar cru <libname> <objs>
cmd_exe: /usr/bin/mpif90.openmpi -fconvert=big-endian -frecord-marker=4 -lpthread -v -lm -o <exename> <objs> -Wl,--start-group <libs> -Wl,--end-group
#
mods_all: -I <config>
#
incs_parallel: -I /usr/lib/openmpi/
#libs_parallel: /home/victor/opentelemac/v6p2/metis-5.1.0/build/Linux-x86_64/libmetis/libmetis.a
libs_parallel: /usr/lib/libmetis-edf.a
#libs_all: /usr/lib/mpich2/lib/libmpich.so
libs_all: /usr/lib/libmetis-edf.so
#
sfx_zip: .gztar
sfx_lib: .lib
sfx_obj: .o
sfx_mod: .mod
sfx_exe:
#
# also possible val_root: <root>/../validation
val_root: <modpath>/validation
val_rank: all
# also possible val_rank: <3 >7 6
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Error when Running simulation

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