Hello Nathalie,
In your case, you should have GEOGRAPHIC SYSTEM = 5 rather than 1 because it is the geographic system before the interpolation of the tidal constituents in TELEMAC-2D, which should be given. In your case, the longitudes/latitudes with SPHERICAL COORDINATES = YES are converted into a plane projection in Mercator coordinates (GEOGRAPHIC SYSTEM = 5).
Anyway, you should refine your mesh on the liquid boundaries close to the coasts. The transition from the coast to the sea is rather quick with flat triangles in some areas.
Hope this helps,
Chi-Tuan